PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0017s0226.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 282aa    MW: 30918.6 Da    PI: 6.1577
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0017s0226.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-18116170256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ ++t+eq  +Le++F+ +++++++++  LAk+l+L  rqV vWFqNrRa+ k
  Kalax.0017s0226.1.p 116 RKKLRLTREQSAVLEDMFRDHNTLNQKQKVALAKQLDLRPRQVEVWFQNRRARTK 170
                          678899***********************************************98 PP
2HD-ZIP_I/II123.88.2e-40116205191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl++eq+++LE++F+ +++L++++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  Kalax.0017s0226.1.p 116 RKKLRLTREQSAVLEDMFRDHNTLNQKQKVALAKQLDLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-A 204
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Kalax.0017s0226.1.p 205 L 205
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046187.1E-7686IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.607.9E-1896170IPR009057Homeodomain-like
SuperFamilySSF466897.7E-18109173IPR009057Homeodomain-like
PROSITE profilePS5007116.973112172IPR001356Homeobox domain
SMARTSM003891.0E-15114176IPR001356Homeobox domain
CDDcd000861.79E-15116173No hitNo description
PfamPF000468.0E-16116170IPR001356Homeobox domain
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
SMARTSM003408.2E-27172215IPR003106Leucine zipper, homeobox-associated
PfamPF021832.3E-11172206IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEGDKEDDGL ELSLTLKCPG NSSNLSPPAL QQPARWQLLF QPIDRNVYLR RGAAIPVVDL  60
AEDEIDVSSP NDSTVSSLSG KRSDREANNV NLNGDENEAE RASSSGKMSD EEDGGRKKLR  120
LTREQSAVLE DMFRDHNTLN QKQKVALAKQ LDLRPRQVEV WFQNRRARTK LKQTEVDCEY  180
LKRCCENLTE ENRRLQKEVQ ELRALKLSPQ MYMQMTPATT LTICPSCERV SSSAAAGGGN  240
GHVAGASGSG VNNSAGLQVQ PPVQMNIPWA TLPGHHGGGQ P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164172RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368991.11e-89homeobox-leucine zipper protein HAT4
SwissprotP929533e-76ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLA0A2G5CBT72e-91A0A2G5CBT7_AQUCA; Uncharacterized protein
STRINGAquca_067_00037.13e-92(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-78homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  3. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]