PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0017s0175.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ARR-B

Protein Properties

Length: 648aa MW: 70727.3 Da PI: 5.0969

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0017s0175.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.7	7e-30	204	257	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr++WtpeLH++Fv+av+qL G++kA+Pk+il++m+v+gLt+e+v+SHLQkYR+ Kalax.0017s0175.1.p 204 RPRVVWTPELHRKFVSAVNQL-GIDKAVPKKILDVMDVEGLTRENVASHLQKYRM 257 59*****************.******************************8 PP
2	Response_reg	79.8	9.3e-27	19	127	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vdD+++ + ++++l++ +y +v+++ ++eale+l+e++ +D++++D++mp++dG++ll++i e +lp+i+++ ++ + ++ + Kalax.0017s0175.1.p 19 VLCVDDDQTCLFWMENLLKSCQY-NVTTTLYAREALEMLRENKrmYDIVITDVQMPDIDGFQLLETIGLEM-DLPVIMMSIYDHQGYVSR 106 89*******************.***********99999*******************6654.8************* PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 ++ Ga d+l Kp+ ee+ + Kalax.0017s0175.1.p 107 GVHHGAVDYLLKPVRLEEIQN 127 ***************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF036392	4.7E-139	1	646	IPR017053	Response regulator B-type, plant
SuperFamily	SSF52172	4.13E-33	16	140	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	3.6E-39	16	140	No hit	No description
SMART	SM00448	7.6E-28	17	129	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	39.5	18	133	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	7.2E-24	19	127	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	9.97E-26	20	133	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-31	201	262	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.609	201	260	IPR017930	Myb domain
SuperFamily	SSF46689	1.34E-20	202	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-25	205	257	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	206	256	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MGPQQEKEID DKFPVGIRVL CVDDDQTCLF WMENLLKSCQ YNVTTTLYAR EALEMLRENK 60 RMYDIVITDV QMPDIDGFQL LETIGLEMDL PVIMMSIYDH QGYVSRGVHH GAVDYLLKPV 120 RLEEIQNIWQ HVLRKRKGLD KGKKVVTQDK SSPGAGNGAV ANSIASAGDT SDKRGRDPSD 180 KDDEDYEEED DSGRENEEQT SQKRPRVVWT PELHRKFVSA VNQLGIDKAV PKKILDVMDV 240 EGLTRENVAS HLQKYRMYLK RISNGNPQQD MFRALGGRHA LDAMGYRGGR LHNSLLSGYP 300 PSLSGILSGR VNSSNGVNFR SISSSDLIQS GQNLRNSINP LAKPNVMPSL QNGSLFQGMQ 360 GGFEQDPTQA SKAMTQLADF NPGLGATGLR VSENLMDPKV VLNGSSSRKM LPAPSQFSQT 420 GASPVPGALR IGGMPGAPSN NAGMMNHSGT SDSWKSAAQF PQSSFQMGGS GSENGTFTQD 480 QHLPINNNAM NGIASTGIQP QLLGFPQMLA PLRNSNIGMQ GELGMHNAEH IKQQEYTQEL 540 NNLFGSLNPI MTSGGSIMGS MGTDQNHLVA NGGNFVGQQT GILGPDPNFK PSNDSFVPEQ 600 ANLPQDDFIP NNVESLDEIM NTMIRRDNNG ASSLFMDGDF NFDVEGL*

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MGPQQEKEID DKFPVGIRVL CVDDDQTCLF WMENLLKSCQ YNVTTTLYAR EALEMLRENK  60
RMYDIVITDV QMPDIDGFQL LETIGLEMDL PVIMMSIYDH QGYVSRGVHH GAVDYLLKPV  120
RLEEIQNIWQ HVLRKRKGLD KGKKVVTQDK SSPGAGNGAV ANSIASAGDT SDKRGRDPSD  180
KDDEDYEEED DSGRENEEQT SQKRPRVVWT PELHRKFVSA VNQLGIDKAV PKKILDVMDV  240
EGLTRENVAS HLQKYRMYLK RISNGNPQQD MFRALGGRHA LDAMGYRGGR LHNSLLSGYP  300
PSLSGILSGR VNSSNGVNFR SISSSDLIQS GQNLRNSINP LAKPNVMPSL QNGSLFQGMQ  360
GGFEQDPTQA SKAMTQLADF NPGLGATGLR VSENLMDPKV VLNGSSSRKM LPAPSQFSQT  420
GASPVPGALR IGGMPGAPSN NAGMMNHSGT SDSWKSAAQF PQSSFQMGGS GSENGTFTQD  480
QHLPINNNAM NGIASTGIQP QLLGFPQMLA PLRNSNIGMQ GELGMHNAEH IKQQEYTQEL  540
NNLFGSLNPI MTSGGSIMGS MGTDQNHLVA NGGNFVGQQT GILGPDPNFK PSNDSFVPEQ  600
ANLPQDDFIP NNVESLDEIM NTMIRRDNNG ASSLFMDGDF NFDVEGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	3e-25	200	263	1	64	ARR10-B

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	4e-87	response regulator 12

Link Out ? help Back to Top
Phytozome	Kalax.0017s0175.1.p