PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0017s0108.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Nin-like
Protein Properties Length: 224aa    MW: 25422 Da    PI: 9.3766
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0017s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.11.3e-264190352
               RWP-RK  3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                         k ++ +++s+yF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl
  Kalax.0017s0108.1.p 41 KVLTRKMISQYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLMSL 90
                         77999******************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.18923111IPR003035RWP-RK domain
PfamPF020422.8E-224390IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAAGGWPEFI SGFNDNEIRD VEAPGKKRAR KVKEEQIRSS KVLTRKMISQ YFYMPITQAA  60
KELNIGLTLL KKRCRELGIR RWPHRKLMSL QTLITNVQEL GRDEGEGSDE KLKMAVEVLE  120
RERKMMEELP DMQLEDKTKK LRQACFKANY KKRKMVGNGG ASNNGGSSAQ WNYSFRCGGS  180
RSCTTSLSSS YSGIKYLEDE EDDEMRSLLS DCFSSSDSNS LLF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021287140.11e-74protein RKD1
SwissprotQ9M9U94e-54RKD1_ARATH; Protein RKD1
TrEMBLA0A061FXS18e-68A0A061FXS1_THECC; RWP-RK domain-containing protein, putative
TrEMBLF6GT762e-68F6GT76_VITVI; Uncharacterized protein
STRINGVIT_17s0000g06250.t013e-69(Vitis vinifera)
STRINGEOY218631e-68(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-55RWP-RK domain-containing protein