PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0017s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 805aa    MW: 87105.8 Da    PI: 6.0311
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0017s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.7e-21115170156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  Kalax.0017s0022.1.p 115 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 170
                          688999***********************************************999 PP
2START197.94.4e-623225461206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela++a++elvk+a+ +ep+W  s     e +n+de++++f++  +     + +ea+r++g v+ ++  lve+l+d++ +W e+++    
  Kalax.0017s0022.1.p 322 ELALSAMNELVKLAQTDEPLWLPSLdggrEVLNRDEYTRTFTPCIGmkpngFMSEASRETGTVIINSLALVETLMDSN-RWAEMFPcvia 410
                          57899***********************9*************9988999999**************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +  t++vissg      g lqlm aelq+lsplv+ R++ f+R+++ql +g w++vdvS+ds ++ +  ss+v +++lpSg+++++++ng
  Kalax.0017s0022.1.p 411 RTGTTDVISSGmggtrnGMLQLMHAELQVLSPLVSvREVNFLRFCKQLAEGAWAVVDVSIDSIRETSGISSYVSCRRLPSGCIVQDMPNG 500
                          *****************************************************************999********************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwveh++++++++h l+++l++sg+ +ga++wvatlqrqce+
  Kalax.0017s0022.1.p 501 YSKVTWVEHAEYDDSSVHRLYKPLLSSGMGFGAQRWVATLQRQCEC 546
                          ********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-2197172IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-22107172IPR009057Homeodomain-like
PROSITE profilePS5007117.216112172IPR001356Homeobox domain
SMARTSM003891.7E-17113176IPR001356Homeobox domain
CDDcd000861.96E-18114172No hitNo description
PfamPF000462.1E-18115170IPR001356Homeobox domain
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
PROSITE profilePS5084844.427313549IPR002913START domain
SuperFamilySSF559611.28E-34314546No hitNo description
CDDcd088753.14E-121317545No hitNo description
PfamPF018521.1E-53322546IPR002913START domain
SMARTSM002343.3E-49322546IPR002913START domain
SuperFamilySSF559611.05E-23573796No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MSSGAYLDEP TSGGGVGGGG RVVVTDASYV VGDCSLSGGA ITPMNKSMFN SSGLSLAIQT  60
SLEGQGEVSR MGENYAAAVG GRRSREEEHE SRSGSDNMDG GSGDDLDGSD NPPRKKRYHR  120
HTPQQIQELE ALFKECPHPD EKQRLELSRR LCLETRQVKF WFQNRRTQMK TQLERHENSM  180
LRAENDKLRA ENMSIKDAMR NAICTNCGGQ AVIGDGSIEE QHLRIDNVRL KDELDRVCGL  240
ASKFLGRPVS SLASTSMTMP SSSLELGVGS SNCFANINAA LPMGTDFIGM MNPVEVVPSS  300
RSTLTNGLIG ADRSMERSLF LELALSAMNE LVKLAQTDEP LWLPSLDGGR EVLNRDEYTR  360
TFTPCIGMKP NGFMSEASRE TGTVIINSLA LVETLMDSNR WAEMFPCVIA RTGTTDVISS  420
GMGGTRNGML QLMHAELQVL SPLVSVREVN FLRFCKQLAE GAWAVVDVSI DSIRETSGIS  480
SYVSCRRLPS GCIVQDMPNG YSKVTWVEHA EYDDSSVHRL YKPLLSSGMG FGAQRWVATL  540
QRQCECLAIL MSSTVTSRDH TAITASGRRS MLKLAQRMTN NFCAGVCASS VHNWNKLNAG  600
NVGEDVRVMT RKSVDDPGEP PGIVLSAATS VWLPVSPQRV FDFLRDERLR SEWDILSNGG  660
PMQEMARIAK GQDHGNCVTL LRASAVNANQ SMLILQETCI DAAGSLVVYA PVDTPAMHLV  720
MNGGDSAYVA LLPSGFAIVP DGPGPVRSQD GSGRAGGSLL TVAFQILVNS LPTAKLTVES  780
IETVNNLISC TVQKIKSALH SETH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661562.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLF6I3160.0F6I316_VITVI; Uncharacterized protein
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]