PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0015s0088.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 24152.2 Da PI: 9.2656 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5e-20 | 24 | 78 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +f++eq++ Le +F +++p+ ++++LA++lgL rqV +WFqNrRa+ k Kalax.0015s0088.1.p 24 TKKKKFSDEQIRSLEVMFGLESKPDPCRKQQLAAELGLHPRQVAIWFQNRRARLK 78 68899************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 116.6 | 1.5e-37 | 25 | 116 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+++s+eq+++LE +F e+k +p rK++la eLgl+prqva+WFqnrRAR k kq+E++y++Lk++ydal+ + e+L+ke+++L+++l Kalax.0015s0088.1.p 25 KKKKFSDEQIRSLEVMFGLESKPDPCRKQQLAAELGLHPRQVAIWFQNRRARLKPKQIEREYDSLKASYDALACKFESLKKENQSLNSQL 114 9***************************************************************************************99 PP HD-ZIP_I/II 92 ke 93 ++ Kalax.0015s0088.1.p 115 RT 116 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.43E-19 | 11 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.702 | 20 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-18 | 22 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-17 | 24 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 26 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.24E-14 | 29 | 81 | No hit | No description |
PRINTS | PR00031 | 2.2E-6 | 51 | 60 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 55 | 78 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.2E-6 | 60 | 76 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.7E-16 | 80 | 120 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF03670 | 5.1E-5 | 83 | 134 | IPR022788 | Uncharacterised protein family UPF0184 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSSNEASVCR SVRSNSCSSN KMKTKKKKFS DEQIRSLEVM FGLESKPDPC RKQQLAAELG 60 LHPRQVAIWF QNRRARLKPK QIEREYDSLK ASYDALACKF ESLKKENQSL NSQLRTLIEK 120 FERVRMDING RMSEPANASA STEKVGDQQQ GGGSGNNGEQ KLSVVEKLSG SGNIPMEMMY 180 SSPFASSANS WSSEYSCFLD QSKSCGSSQW WEFW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 80 | RRARLKPKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-30 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0015s0088.1.p |