PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0015s0072.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 1015aa    MW: 111868 Da    PI: 5.0449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0015s0072.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.7e-183985148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Kalax.0015s0072.1.p 39 KGQWTAEEDEILSKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85
                         799****************************9.************986 PP
2Myb_DNA-binding62.11.2e-1991137148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+W+++Ede +v++v+q+G + W+tIa++++ gR +kqc++rw+++l
  Kalax.0015s0072.1.p  91 KGPWSKQEDEVIVQLVNQYGAKKWSTIAQHLP-GRIGKQCRERWHNHL 137
                          79******************************.*************97 PP
3Myb_DNA-binding461.2e-14143185145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r +WT+ E++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  Kalax.0015s0072.1.p 143 REAWTQKEELALIQAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 185
                          789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1753485IPR017930Myb domain
SuperFamilySSF466897.11E-183799IPR009057Homeodomain-like
SMARTSM007176.4E-153887IPR001005SANT/Myb domain
PfamPF002491.8E-153985IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-214093IPR009057Homeodomain-like
CDDcd001671.40E-134285No hitNo description
PROSITE profilePS5129431.09386141IPR017930Myb domain
SuperFamilySSF466891.46E-3088184IPR009057Homeodomain-like
SMARTSM007176.4E-1890139IPR001005SANT/Myb domain
PfamPF002492.5E-1791137IPR001005SANT/Myb domain
CDDcd001671.72E-1593137No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2694140IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-20141192IPR009057Homeodomain-like
PROSITE profilePS5129418.438142192IPR017930Myb domain
SMARTSM007175.9E-14142190IPR001005SANT/Myb domain
PfamPF002491.0E-12143186IPR001005SANT/Myb domain
CDDcd001671.10E-10145185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1015 aa     Download sequence    Send to blast
MDSDHRTMTH ASQNGADDRR LKVRPPHGRT TGPTRRSTKG QWTAEEDEIL SKAVQRFKGK  60
NWKKIAECFK DRTDVQCLHR WQKVLNPELI KGPWSKQEDE VIVQLVNQYG AKKWSTIAQH  120
LPGRIGKQCR ERWHNHLNPA INREAWTQKE ELALIQAHQI YGNKWAELTK FLPGRTDNAI  180
KNHWNSSVKK KMESYIASGL LSQLQGLPLD GQNLSMSSPA SRMQQSSGDE SNLKEGNDVE  240
DISECSQGST APGCSLNASD MNNRILHARS EFMHTNCSGQ MKQERCSPQS SEAYFASIEE  300
VNMSIPEIVV NCSLLDRNSS HTSGGLLAND DYNLQEFPGM SLLELGQDQP YGPTANGSNE  360
MLHLPYYNSS LVTASISSGN TVSESTSCLP ISIPSNAGAD GCGVCHSLSF SNAVEMDGCE  420
DSLILQASNL QIQDSMGTSA SHSTYMRSEV EENSCFQAPS SGPPYLNFHD NKLSYGCGPS  480
QVDHFPPGTQ EQDLAGSPCN EFMPTEDFTE PLCNGGTEST VLHGHLNYQQ YTDHLPDEPI  540
ERLDECTHII DELPTAKIEG REQDNGSLFY EPPRFPSLDV PFFSCDLVRS SNDLQQEYSP  600
LGIRQLMMSS VNCLTPFRLW DSPTRENSPD ALLKSAAKTF SGTPSILKKR HRDLLSPLSD  660
RRKDKRLDSD SKQKSFSSLA RDFSNLDAMF EETATCSTAT QKRDSGEFSD DKENVDPAVM  720
RQKEVERGGS GSEKDSSLCR TEENKSSNYG LDQESQHDAG VDGHVQKSSE NLADNDLENI  780
LIFSPDQVGL EADKVFVPSA WANPPSSGSR HTPSINSPSV NRSRSHVTGS SSKCLTPSCL  840
EIAISNAGLE MGIENGNMFG GTPFKISFES PSAWKSPRFM NSFLPGPRVD TDITIEDIGY  900
FLSPGERSCD ALGLMEQLSE RSAAAIAEAH EMLGNETPKA ILRETHSKSA NAGHPDTSDN  960
QPGSLSRFAP DMLPERQVLD FSECETPNKE NEVRRASPSV KLLSPSSYLV KGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-67391926159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-67391926159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1659666DRRKDKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618556.10.0transcription factor MYB3R-1
TrEMBLA0A2C9VK700.0A0A2C9VK70_MANES; Uncharacterized protein
STRINGEOY296790.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-110Homeodomain-like protein