PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0015s0036.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 130aa MW: 13784.3 Da PI: 9.8666

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0015s0036.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+++F ++ L H++ H Kalax.0015s0036.1.p 45 FTCLYCNRRFCNSQALGGHQNAH 67 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.6E-5	44	72	No hit	No description
PROSITE profile	PS50157	11.115	45	72	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	47	67	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MADQKNFLKQ AASARQHSSP AAAAPAFFFP NTHYYPPHPA AQGGFTCLYC NRRFCNSQAL 60 GGHQNAHKRE RAAARRRPAP GGQPIHNNNN AAAAAAWLYP AATLLHYNSI SSSGGGAGAD 120 EEIDLTLRL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099006.1	3e-16	zinc finger protein 4
TrEMBL	A0A446XZ45	1e-14	A0A446XZ45_TRITD; Uncharacterized protein
TrEMBL	A0A4D8Y9V1	2e-14	A0A4D8Y9V1_SALSN; Uncharacterized protein
STRING	Traes_7AL_0BC1C3E70.1	2e-14	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	3e-10	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0015s0036.1.p