PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 268aa MW: 30621.4 Da PI: 7.7082

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0013s0256.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1e-17	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll+++++++G g W++++++ g++R++k+c++rw++yl Kalax.0013s0256.1.p 8 KGAWTEDEDILLKECIEKYGAGKWHKVPARSGLNRCRKSCRLRWLNYL 55 79********************************************97 PP
2	Myb_DNA-binding	47.5	4.2e-15	61	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E +l+ +++++lG++ W++Ia +++ gRt++++k++w+++l Kalax.0013s0256.1.p 61 RGPFEEDEVDLIRRLHQLLGNR-WSLIAGRLP-GRTANDIKNYWNTHL 106 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.64	3	59	IPR017930	Myb domain
SuperFamily	SSF46689	2.93E-28	5	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-21	5	58	IPR009057	Homeodomain-like
SMART	SM00717	9.7E-15	7	57	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-16	8	55	IPR001005	SANT/Myb domain
CDD	cd00167	1.64E-10	10	55	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-24	59	110	IPR009057	Homeodomain-like
SMART	SM00717	9.8E-15	60	108	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.964	60	110	IPR017930	Myb domain
Pfam	PF00249	4.4E-14	61	106	IPR001005	SANT/Myb domain
CDD	cd00167	2.83E-9	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MSHIRVRKGA WTEDEDILLK ECIEKYGAGK WHKVPARSGL NRCRKSCRLR WLNYLQPDIK 60 RGPFEEDEVD LIRRLHQLLG NRWSLIAGRL PGRTANDIKN YWNTHLRKKW QPKASANCGS 120 SHKAHDLGTN TTPNKVEILK PRPWKFSKIS IASHSQQNEL SVQYSFKYDK GNDGSENSPI 180 KEMHPSSRSS ELHEDDLPTS SWWERLLQDE AAILSEETAS GSVEVRQKDE EVPPPAAAKE 240 SGEEGGVLSL HHHEFDIELF WDLLAKT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-22	8	109	4	104	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	3e-22	8	109	27	127	MYB TRANSFORMING PROTEIN
1mse_C	2e-22	8	109	4	104	C-Myb DNA-Binding Domain
1msf_C	2e-22	8	109	4	104	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9FNV9	1e-61	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A3G8FWU7	6e-69	A0A3G8FWU7_9SOLA; MYB transcription factor AN2
TrEMBL	A0A3G8FWW8	6e-69	A0A3G8FWW8_9SOLA; MYB transcription factor AN2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	5e-64	myb domain protein 113

Link Out ? help Back to Top
Phytozome	Kalax.0013s0256.1.p

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]