PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0175.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 273aa    MW: 30700.7 Da    PI: 6.706
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0175.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.4e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd  l+++ + +G g W+ +++  g++R++k+c++rw++yl
  Kalax.0013s0175.1.p 14 KGAWTAEEDRMLAEYMEVHGHGKWRNVPNVTGLKRCRKSCRLRWLNYL 61
                         79********************************************97 PP
2Myb_DNA-binding55.11.8e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w++yl
  Kalax.0013s0175.1.p  67 RGNISPDEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTYL 112
                          7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.006961IPR017930Myb domain
SuperFamilySSF466895.87E-2912108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002495.3E-141461IPR001005SANT/Myb domain
CDDcd001672.13E-91661No hitNo description
PROSITE profilePS5129426.70862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2465116IPR009057Homeodomain-like
SMARTSM007172.7E-1666114IPR001005SANT/Myb domain
PfamPF002491.0E-1567112IPR001005SANT/Myb domain
CDDcd001671.31E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGRRPCCVKE GLNKGAWTAE EDRMLAEYME VHGHGKWRNV PNVTGLKRCR KSCRLRWLNY  60
LRPDIKRGNI SPDEEDLIVR LHKLLGNRWS LIAGRLPGRT DNEVKNYWNT YLSKKIRSSN  120
KNSTKKKQQQ PPFHVAQQTS MNHQVLLEEE KSPLVVTASE DLLKINSNYM LNTNCSQMVG  180
SGSNEDCLTL EEIIEFAEFG GGKTQQNNIV VGADAGSSST VQHDSFCLLG PESNLAWPGH  240
KDGHWDDWLL DAMAADAEDW LPDCDGSMLG IF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027182618.18e-69myb-related protein Zm38-like
TrEMBLA0A438K6U71e-67A0A438K6U7_VITVI; Transcription factor MYB3
STRINGGLYMA13G16890.16e-67(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.14e-56myb domain protein 13