PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0013s0094.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 906aa MW: 100410 Da PI: 6.7564

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0013s0094.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.9e-29	603	653	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Kalax.0013s0094.1.p 603 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 653 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.439	590	673	IPR003035	RWP-RK domain
Pfam	PF02042	9.4E-25	605	653	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.66E-22	804	893	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.0E-22	805	888	No hit	No description
PROSITE profile	PS51745	20.699	807	890	IPR000270	PB1 domain
SMART	SM00666	2.7E-24	807	890	IPR000270	PB1 domain
CDD	cd06407	1.43E-40	808	888	No hit	No description
Pfam	PF00564	1.1E-15	808	889	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence Send to blast
MDGSAFPPCN SAVGSFVSPS MDLDLISELF EGGWLEADNG LGAVGGQHWS FARDGFDQFV 60 DMDLKGFQSD TELMNNGSAY YPVEMERAVK KGSEDWRPME AMMSSDQLSS GHELSGRTRI 120 HHHQSTQNSC FSVRDRLMLA IARLTGAART KDILVQIWVP IYQQGKCVLI TTDQPFSLSH 180 NSQSLAYYRD VSEKYQFPAE EGDSMVGMPG RVFLGKMPEW TPDVRFFRKE EYPRVDYAQR 240 YNVQGSLALP VFERATGACL GVVEIVTTTQ KINYRSELES ICKALEAVDF RSSESLQLLD 300 VKACDEKLKA ALAEIREAIT YVSRTHGLPL AQTWAICSQM GKTGCQHSSK GCSECISTVN 360 SASYVGDSRF LVFRDECCEH HLLIGQGVVG KAFATSRPCF EPDVTAYCKT DYPLSHHAIL 420 HGLCGAAAVR VRSVYADADF VLEFFLPVNC KDDDEQRRMV ASIYAVLQRC LTTFYMVTDN 480 GIKKESMSLM PSYHRSSDNE SPAKRSRRDQ SSWVAEMADA QSQKPGKSVA ISLERRSEQA 540 EDKFEMATFW ENVKEEPPQD FEIIRDEYCF KSLNDTGEDS SSLGECWPGG SAKATDRRRT 600 KSEKTISLQV LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GITRWPSRKI KKVSHSLKKL 660 QLVIDSVQGA DGSIQISSFY SNFPELSSPN FSVATQSSKV INQVQSTEPD GSDRRNAKTK 720 AGLVSSGDAT SSSPSSSSSQ NSESSLSFST GAQHRPNSTL QRVCSDVGLR SPSHDAPPPK 780 LLERSQSHKL FTDHRILPPL PKRRGGAFRV KASFGEEKVR FGLHPHWALE DLQQEIARRF 840 GVDDLGHIQI KYLDDDSEWV LLTCTADLEE CIDVHLSSQS HTIKLSVNKA PQPHLGSSLG 900 STGCP*

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence Send to blast

MDGSAFPPCN SAVGSFVSPS MDLDLISELF EGGWLEADNG LGAVGGQHWS FARDGFDQFV  60
DMDLKGFQSD TELMNNGSAY YPVEMERAVK KGSEDWRPME AMMSSDQLSS GHELSGRTRI  120
HHHQSTQNSC FSVRDRLMLA IARLTGAART KDILVQIWVP IYQQGKCVLI TTDQPFSLSH  180
NSQSLAYYRD VSEKYQFPAE EGDSMVGMPG RVFLGKMPEW TPDVRFFRKE EYPRVDYAQR  240
YNVQGSLALP VFERATGACL GVVEIVTTTQ KINYRSELES ICKALEAVDF RSSESLQLLD  300
VKACDEKLKA ALAEIREAIT YVSRTHGLPL AQTWAICSQM GKTGCQHSSK GCSECISTVN  360
SASYVGDSRF LVFRDECCEH HLLIGQGVVG KAFATSRPCF EPDVTAYCKT DYPLSHHAIL  420
HGLCGAAAVR VRSVYADADF VLEFFLPVNC KDDDEQRRMV ASIYAVLQRC LTTFYMVTDN  480
GIKKESMSLM PSYHRSSDNE SPAKRSRRDQ SSWVAEMADA QSQKPGKSVA ISLERRSEQA  540
EDKFEMATFW ENVKEEPPQD FEIIRDEYCF KSLNDTGEDS SSLGECWPGG SAKATDRRRT  600
KSEKTISLQV LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GITRWPSRKI KKVSHSLKKL  660
QLVIDSVQGA DGSIQISSFY SNFPELSSPN FSVATQSSKV INQVQSTEPD GSDRRNAKTK  720
AGLVSSGDAT SSSPSSSSSQ NSESSLSFST GAQHRPNSTL QRVCSDVGLR SPSHDAPPPK  780
LLERSQSHKL FTDHRILPPL PKRRGGAFRV KASFGEEKVR FGLHPHWALE DLQQEIARRF  840
GVDDLGHIQI KYLDDDSEWV LLTCTADLEE CIDVHLSSQS HTIKLSVNKA PQPHLGSSLG  900
STGCP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010645880.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010645886.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010645896.1	0.0	PREDICTED: protein NLP2
TrEMBL	A0A438JSZ8	0.0	A0A438JSZ8_VITVI; Protein NLP2
TrEMBL	F6I0S7	0.0	F6I0S7_VITVI; Uncharacterized protein
STRING	VIT_03s0038g03710.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0013s0094.1.p