PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kalax.0013s0039.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 331aa MW: 36811.7 Da PI: 9.9879

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0013s0039.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50	5.5e-16	157	203	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRdriN+++ +L++l+P+a K +Ka++L ++++Y+k+Lq Kalax.0013s0039.2.p 157 VHNQSERKRRDRINQKMKTLQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 203 5***********************9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.339	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-19	156	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-13	157	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.4E-17	157	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.18E-16	158	207	No hit	No description
SMART	SM00353	6.1E-17	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEPFYRLNDY DQVAELTWEN GQLGFQGLAP ATHGAKPTWG TANETLESIV QQGSTVFHHQ 60 QPQQHSNLNH IHYPPANTNP CSSFAASSTW LESDHRHARV ESLKRSSLKE SNTVIMTRAT 120 EEDLVYHYGS DNKNEGHDSK GGAGRSSSTR RSRTAAVHNQ SERKRRDRIN QKMKTLQKLV 180 PNASKTDKAS MLDEVIKYLK QLQGQIQMMN YVRNMPPMMV PLAMQQQQNQ MSLLARTGMN 240 LNMGLMGMGG MLNMMHMPRS MPLQSAPHPS ATPSTNATFP PSFLMVPPMI PTPPISQSMN 300 TDLFNKMAAF CAQQANSRAT AIQEKTSPTS *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	105	ESLKRS
2	161	166	ERKRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015571978.1	7e-76	transcription factor PIF7 isoform X2
Swissprot	Q8GZ38	3e-38	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A061G4L1	2e-71	A0A061G4L1_THECC; DNA binding protein, putative isoform 4
STRING	EOY21971	6e-72	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0013s0039.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]