PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0013s0004.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 807aa    MW: 87246.9 Da    PI: 5.9145
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0013s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.8e-21117172156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  Kalax.0013s0004.1.p 117 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 172
                          688999***********************************************999 PP
2START192.71.8e-603245481206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela++a++elvk+a+ +ep+W  s     e +n+de++++f++  +     + +ea+r++g v+ ++  lve+l+d++ +W e+++    
  Kalax.0013s0004.1.p 324 ELALSAMNELVKLAQTDEPLWLPSLdggrEVLNRDEYTRTFTPCIGmkpngFMSEASRETGTVIINSLALVETLMDSN-RWAEMFPcvia 412
                          57899***********************9*************9988999999**************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +  t++vissg      g lqlm aelq+lsplv+ R++ f+R+++ql +g w++vdvS+ds ++ +  ss+v  ++lpSg+++++++ng
  Kalax.0013s0004.1.p 413 RTGTTDVISSGmggtrnGMLQLMHAELQVLSPLVSvREVNFLRFCKQLAEGAWAVVDVSIDSIRETSGISSYVSYRRLPSGCIVQDMPNG 502
                          *****************************************************************999********************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwveh++++++++h l+++l++sg+ +ga++wvatlqrqce+
  Kalax.0013s0004.1.p 503 YSKVTWVEHAEYDDSSVHPLYKPLLSSGMGFGAQRWVATLQRQCEC 548
                          ********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-2199174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-22109174IPR009057Homeodomain-like
PROSITE profilePS5007117.216114174IPR001356Homeobox domain
SMARTSM003891.7E-17115178IPR001356Homeobox domain
CDDcd000861.97E-18116174No hitNo description
PfamPF000462.1E-18117172IPR001356Homeobox domain
PROSITE patternPS000270149172IPR017970Homeobox, conserved site
PROSITE profilePS5084846.264315551IPR002913START domain
SuperFamilySSF559616.41E-34316548No hitNo description
CDDcd088751.68E-120319547No hitNo description
PfamPF018522.5E-52324548IPR002913START domain
SMARTSM002347.1E-47324548IPR002913START domain
SuperFamilySSF559611.1E-23575798No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MSTGAYLDEP TSGGGVGGGG GRVVVTDASY VVGDCSLSGG AITPMNKSMF NSSGLSLAIQ  60
TSLEGQGELS RMGENYAAAA VGGRRSREEE HESRSGSDNM DGGSGDDLDG SDNPPRKKRY  120
HRHTPQQIQE LEALFKECPH PDEKQRLELS RRLCLETRQV KFWFQNRRTQ MKTQLERHEN  180
SMLRAENDKL RAENMSIKDA MRNAICTNCG GQAVIGDGSI EEQHLRIENV RLKDELDRVC  240
GLASKFLGRP VSSLASTSMT MPSSSLELGV GSSNCFANIN AALPMGTDFI GMMNPVEVVP  300
SSRSTLTNGL IGVDRSMERS LFLELALSAM NELVKLAQTD EPLWLPSLDG GREVLNRDEY  360
TRTFTPCIGM KPNGFMSEAS RETGTVIINS LALVETLMDS NRWAEMFPCV IARTGTTDVI  420
SSGMGGTRNG MLQLMHAELQ VLSPLVSVRE VNFLRFCKQL AEGAWAVVDV SIDSIRETSG  480
ISSYVSYRRL PSGCIVQDMP NGYSKVTWVE HAEYDDSSVH PLYKPLLSSG MGFGAQRWVA  540
TLQRQCECLA ILMSSTVASR DHTAITASGR RSMLKLAQRM TNNFCAGVCA SSVHNWNKLN  600
AGNVGEDVRV MTRKSVDDPG EPPGIVLSAA TSVWLPVSPQ RVFDFLRDER LRSEWDILSN  660
GGPMQEMARI AKGQDHGNCV TLLRASAVNA NQSMLILQET CIDAAGSLVV YAPVDTPAMH  720
LVMNGGDSAY VALLPSGFAI VPDGPGPARS QDGSGRAGGS LLTVAFQILV NSLPTAKLTV  780
ESIETVNNLI SCTVQKIKSA LHSETH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661562.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLF6I3160.0F6I316_VITVI; Uncharacterized protein
STRINGVIT_15s0048g02000.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]