PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0012s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GeBP
Protein Properties Length: 446aa    MW: 49824.6 Da    PI: 4.34
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0012s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573113.11.8e-35135234198
               DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                          klfqrlw++eDei lLqG++d  +++g+s+ +  d+  fy+++k++++++++k+qlveK+rrLKkK+++  ++++sgke++f+++hdq +
  Kalax.0012s0017.1.p 135 KLFQRLWTDEDEIGLLQGFLDHSTQRGSSQNNphDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLARVSSGKEIQFKSPHDQAT 224
                          579************************9555446******************************************************** PP

               DUF573  89 felskkiWgs 98 
                          fe++ kiWg+
  Kalax.0012s0017.1.p 225 FEIACKIWGT 234
                          ********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.4E-33137233IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MSSDEDQQAP IAGHNVEDDE PDEIDDDDEE TEEDEEEEDD GEGELERNNN VIQEEEEDVD  60
VEEVDRNISL SSLNSDPTRS VTIAVPAPDI PIAEAAAEIA SESAAKRLRI LEDEPIGELQ  120
RVNPNPPSSD DQARKLFQRL WTDEDEIGLL QGFLDHSTQR GSSQNNPHDT ALFYDQIKSK  180
LQLDFNKNQL VEKLRRLKKK YRNVLARVSS GKEIQFKSPH DQATFEIACK IWGTAQNSQC  240
SKDQAQQPQQ QMRAADVDDD MPPNFNPASA TNLNLNFVSN SNNFNSSGGY SNYHHSDRAG  300
VDEWKSQPQQ QKVKKRIRVK MEDIRSSTDH KAAVATNSSP AQIPIWGPPG TNLPAPSLVE  360
EIVKNRISPL MYDIKGNRGY GGLGDGIVRP VPLSFASPVN ALGTDATDDR WRKQQILELE  420
VYSKRLELVQ EQIKLTLEQL RSTGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311317KVKKRIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.23e-48DNA-binding storekeeper protein-related transcriptional regulator