PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0011s0034.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 257aa    MW: 28798.8 Da    PI: 5.2116
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0011s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-1952106357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          k++++++ q+++Le++F  ++++  e++ +LA+++gL+ rqV vWFqNrRa++k+
  Kalax.0011s0034.1.p  52 KKRRLSSAQVKALERHFSADNKLEPERKLKLAAEIGLQPRQVAVWFQNRRARWKN 106
                          56689************************************************95 PP
2HD-ZIP_I/II120.68e-3951143193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls+ qvk+LE++F++++kLeperK +la e+glqprqvavWFqnrRAR+k+kqlE++ye+Lk+ y +lk + +++e+e+e+L++e
  Kalax.0011s0034.1.p  51 EKKRRLSSAQVKALERHFSADNKLEPERKLKLAAEIGLQPRQVAVWFQNRRARWKNKQLEREYEVLKSGYAELKVSYASVEREKEALTAE 140
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          l++
  Kalax.0011s0034.1.p 141 LMD 143
                          975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-1943109IPR009057Homeodomain-like
PROSITE profilePS5007117.52447107IPR001356Homeobox domain
SMARTSM003893.7E-1850111IPR001356Homeobox domain
CDDcd000869.76E-1752108No hitNo description
PfamPF000462.9E-1652106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-2054114IPR009057Homeodomain-like
PRINTSPR000311.7E-57887IPR000047Helix-turn-helix motif
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
PRINTSPR000311.7E-587103IPR000047Helix-turn-helix motif
PfamPF021834.0E-13107148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKRFCSSSSD SLLSFVSMPS PPQDDGDYCR ELQAMLDGLD EEENANGAQT EKKRRLSSAQ  60
VKALERHFSA DNKLEPERKL KLAAEIGLQP RQVAVWFQNR RARWKNKQLE REYEVLKSGY  120
AELKVSYASV EREKEALTAE LMDLKTKLKE DILVFSDSAR NSTSDEQESS KLNDVVLHQH  180
STSHHTHNYH QTTWSSSSSS PLLQFDCSTS HPPPQDLAWF QQTGGGVDGF CSVYGSAGDE  240
GSPAGLNWLS FEQSDF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107RRARWKNKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022766401.12e-52homeobox-leucine zipper protein ATHB-6-like
SwissprotQ940J15e-40ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
STRINGGorai.009G233900.16e-51(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-39homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]