PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0011s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93669.9 Da    PI: 5.9333
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0011s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-182886357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Kalax.0011s0012.1.p 28 KYVRYTPEQVEALERVYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 86
                         5679*****************************************************97 PP
2START170.11.5e-531733812205
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+++l+d++ W + ++ +++l+v s++  g
  Kalax.0011s0012.1.p 173 IAEETLTEFLSKATGTAVEWVQLPGMKPGPDSIGIIAISHSCVGVAARACGLVSLDPP-RVADILKDRPSWYRECRTVDVLNVMSTAngG 261
                          789*******************************************************.9999999999*****************999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l++ Rdf+ +R++  +++g++vi+++S++++q+ p+     ++vRae+lpSg+li+p+++g+s +++v+h+dl+ +
  Kalax.0011s0012.1.p 262 TIELLYMQLYAPTTLAAaRDFWLLRFTSVMEDGSLVICERSLNHTQNGPSmppVNHFVRAEMLPSGYLIRPCEGGGSIIHVVDHMDLEVS 351
                          ************************************************99888899********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqce 205
                          +++++lr+l++s++  ++kt++a+l+++++
  Kalax.0011s0012.1.p 352 SVPEVLRPLYESSALLAQKTTMAALRQLRQ 381
                          **************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-191586IPR009057Homeodomain-like
PROSITE profilePS5007115.6942387IPR001356Homeobox domain
SMARTSM003894.7E-162591IPR001356Homeobox domain
SuperFamilySSF466892.99E-172689IPR009057Homeodomain-like
CDDcd000864.03E-172888No hitNo description
PfamPF000464.3E-162986IPR001356Homeobox domain
CDDcd146862.41E-680119No hitNo description
PROSITE profilePS5084825.363163378IPR002913START domain
CDDcd088751.70E-73167382No hitNo description
SMARTSM002344.9E-40172382IPR002913START domain
SuperFamilySSF559611.33E-35172383No hitNo description
Gene3DG3DSA:3.30.530.201.0E-21172378IPR023393START-like domain
PfamPF018521.9E-50173381IPR002913START domain
PfamPF086707.3E-51707849IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MGNHNQGELE VMMSMNSGGS KMGMDNGKYV RYTPEQVEAL ERVYHECPKP SSIRRQQLIR  60
ECPILSNIEP KQIKVWFQNR RCREKQRKES SRLQAVNRKL TAMNKLLMEE NDRLQKQVSQ  120
LVYENGYFRQ QTQNTTVAAT DTSCESVVTS GQQQLVPFQH PPRDASPAGL LSIAEETLTE  180
FLSKATGTAV EWVQLPGMKP GPDSIGIIAI SHSCVGVAAR ACGLVSLDPP RVADILKDRP  240
SWYRECRTVD VLNVMSTANG GTIELLYMQL YAPTTLAAAR DFWLLRFTSV MEDGSLVICE  300
RSLNHTQNGP SMPPVNHFVR AEMLPSGYLI RPCEGGGSII HVVDHMDLEV SSVPEVLRPL  360
YESSALLAQK TTMAALRQLR QISQEISQPA ISSWGRRPAA LRALSQRLNR GFNEAVNGFT  420
DEGWSVVETD GMDDVTILVN SSPSKLVGTN LFYATGLPSS SNAVLCAKAS MLLQDVPPAL  480
LIRFLREHRS EWADSSIDAY SASAIRPGAC GLPETRVGNY GSQIILPLAH TIENEEFMEV  540
IKLENFGHYQ DDMIMPGDIF LLQLCNGIDE TATGTSAELI FAPMDASFSD DAPLLPSGFR  600
IIPLGSGSDP SSPNRTLDLA SALEAGSVGS RVAGDISSQG GKTKSVMTIA FQFAFDLHMQ  660
DNVTAMARQY VRSIISSVQR VALALSPSGF NTHPTIRRPP GTPEAHTLAR WICHSYRSFL  720
GVDLLKPNTD GSEHILKSLW HHSDAVLCCS LKALPVFTFA NQAGMDMLET TFAALQDITL  780
EKIFDENGRK TLCTEFPQIM QLGFMSLQGG ICLSSMGRPV SYERAVAWKV LDEDENAHCI  840
CFMFINWSFV *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918167.10.0homeobox-leucine zipper protein ATHB-8
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A068UKR50.0A0A068UKR5_COFCA; Uncharacterized protein
STRINGXP_010047286.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]