PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0009s0074.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 98aa    MW: 10985.3 Da    PI: 10.1076
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0009s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.2e-0728641954
                         HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          +++L+ l+P+ +s+ ++ + s + +L+++++YIk L
  Kalax.0009s0074.1.p 28 LLSKLQHLIPEaRSRRSGSRASASKVLQETCNYIKRL 64
                         689********776888888***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.912964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-72782IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-42864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-72969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSSRSRSSRS RQHSSSSTTI SEDQVLHLLS KLQHLIPEAR SRRSGSRASA SKVLQETCNY  60
IKRLHQEVDD LSERLAEFLA NMDVDNAQAA VIRNLFM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009758713.12e-33PREDICTED: transcription factor PRE5-like
SwissprotQ9LJX14e-28PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U7UX136e-32A0A1U7UX13_NICSY; transcription factor PRE5-like
STRINGXP_009758713.19e-33(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.17e-24bHLH family protein