PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0009s0071.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 332aa MW: 37216.2 Da PI: 6.7978 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 1.9e-18 | 99 | 151 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ eq+++Le+ Fe+ +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Kalax.0009s0071.1.p 99 KRRLNMEQVKTLEKSFEMGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 151 55899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.4 | 1.7e-42 | 98 | 188 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl+ eqvk+LE+sFe+ +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLkr++da+k++ne+L++++++L++++ Kalax.0009s0071.1.p 98 KKRRLNMEQVKTLEKSFEMGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKRQFDAVKAHNEALQAQNQKLQSQI 187 9**************************************************************************************998 PP HD-ZIP_I/II 92 k 92 + Kalax.0009s0071.1.p 188 S 188 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.73 | 93 | 153 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.99E-19 | 94 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.4E-18 | 96 | 157 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.0E-16 | 98 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.66E-16 | 98 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-19 | 100 | 161 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.0E-5 | 124 | 133 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 128 | 151 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.0E-5 | 133 | 149 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.8E-14 | 153 | 190 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MSCNGMAFFP ANFMLQTSQD QEDEDDNQPH NHHHHHHHQP PVFPPQDFNG VAAFLGGKRS 60 MPLMQQDHNH ACEGTKIHNG DQDHELSDDG SLLAGDPKKR RLNMEQVKTL EKSFEMGNKL 120 EPERKLQLAR ALGLQPRQIA IWFQNRRARW KTKQLEKDYD ALKRQFDAVK AHNEALQAQN 180 QKLQSQISVL MSGGGAAAAV ATESFNLNKE TIDQGSCSNR SENSSDHQTN MVKLDMMSRA 240 VTGPAGESSP SQQIPTSMPL FPTSSSTTTT TTNSMRPASS SNLSATQLFF HHHGHHQQHG 300 VKEENFVSNM FCGIEDQSGF WPWLEQHQNF N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 153 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614380.1 | 1e-105 | homeobox-leucine zipper protein ATHB-13-like | ||||
Refseq | XP_021614381.1 | 1e-105 | homeobox-leucine zipper protein ATHB-13-like | ||||
Refseq | XP_021614382.1 | 1e-105 | homeobox-leucine zipper protein ATHB-13-like | ||||
Refseq | XP_021614383.1 | 1e-105 | homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 9e-92 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A251KUY6 | 1e-104 | A0A251KUY6_MANES; Uncharacterized protein | ||||
STRING | XP_002520111.1 | 1e-103 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 3e-88 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0009s0071.1.p |
Publications ? help Back to Top | |||
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