PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0007s0179.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 778aa MW: 85579.7 Da PI: 5.5138 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.4e-20 | 103 | 158 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+ L+++lgL+ qVk+WFqN+R+++k Kalax.0007s0179.1.p 103 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKALSRELGLEPLQVKFWFQNKRTQMK 158 688999***********************************************998 PP | |||||||
2 | START | 206 | 1.5e-64 | 298 | 519 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 ela +a++el+++ + +ep+Wv s+ + +n+de+ ++f + + + +ea+r+s++v+m++ +lve+l++ + qW +++ Kalax.0007s0179.1.p 298 ELAVAAMEELLRMSQMGEPLWVPSVdgsasSLLNEDEYNRNFHRCIGptpagFITEASRDSAIVIMNHGNLVEILMEAN-QWMTMFSgiv 386 57899********************99999999*********9988899******************************.********** PP .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS START 78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159 +a+tlev+s+g galq+m+aelq+ +plvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ p ++R++++pSg+li++++ Kalax.0007s0179.1.p 387 sRAMTLEVLSTGvagnfnGALQVMTAELQVATPLVPtREIYFVRYCKQHGDGVWAVVDVSLDNLRPSP----IARCRKRPSGCLIQEMPS 472 ******************************************************************99....7***************** PP CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 g+skvtwve+v++++r +h+l+++lv+sgla+ga++wv tl+rqce+ Kalax.0007s0179.1.p 473 GYSKVTWVENVEVDERGVHNLYKPLVNSGLAFGARRWVGTLDRQCER 519 *********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.59E-19 | 87 | 160 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 89 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.763 | 100 | 160 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-18 | 101 | 164 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-17 | 103 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.63E-18 | 103 | 161 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 135 | 158 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.466 | 289 | 522 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.43E-33 | 289 | 521 | No hit | No description |
CDD | cd08875 | 3.26E-121 | 293 | 518 | No hit | No description |
SMART | SM00234 | 4.3E-56 | 298 | 519 | IPR002913 | START domain |
Pfam | PF01852 | 2.7E-53 | 299 | 519 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 5.5E-5 | 398 | 517 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.95E-21 | 537 | 769 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MPAGIMLPAT MIGINGDNIN SVDSFVNSSL GQMNMFQQNL MMDPQQPYHH SLEMMNPNNI 60 NSHSNGIEND HLNEFESKSG SENLEGVSGD DQTDPNQQPN KKKKRYHRHT QHQIQEMESF 120 FKECPHPDDK QRKALSRELG LEPLQVKFWF QNKRTQMKAQ HERHENTQLR NENEKLRAEN 180 MRYREALANA SCPQCGGPTA VGEMSFDEHQ LRLENARLRE EVDKISAIAA KYVGKPLNNY 240 SYPLLSPPVP SRSLELAFPF SSEATMGGAE MFGPASDHLI RSVNEQQPTE ADKPMIVELA 300 VAAMEELLRM SQMGEPLWVP SVDGSASSLL NEDEYNRNFH RCIGPTPAGF ITEASRDSAI 360 VIMNHGNLVE ILMEANQWMT MFSGIVSRAM TLEVLSTGVA GNFNGALQVM TAELQVATPL 420 VPTREIYFVR YCKQHGDGVW AVVDVSLDNL RPSPIARCRK RPSGCLIQEM PSGYSKVTWV 480 ENVEVDERGV HNLYKPLVNS GLAFGARRWV GTLDRQCERL ASSMATYVPN GEGVFTNEEG 540 RRNMMKLAER MVMSFSAGVS ASITHTWTTL SGTGADDVRV MTRKSIDDPG RPPGIVLSAA 600 TSFWVAVPPS RVFDFIRDEN CRNQWDILCD GGVVHEMAHI TNGREAGNCI SLLRVNGANA 660 NQSNMLILQE SCSDATASFV IYAPVDFGAM NSVLSGGDPD YVPLLPSGFA IYPDGPVGHG 720 EVAGPKRAGG SLLTVAFQIL VDSQPTAKLS LGSVATVNQL ISSTVERIKE ALTGQSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657311.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2 isoform X4 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | D7TEM3 | 0.0 | D7TEM3_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0059g02310.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0007s0179.1.p |