PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0006s0195.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 796aa    MW: 88692.9 Da    PI: 4.6971
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0006s0195.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-07114143130
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                          r++WT+eE++ l++a++ +G++t +tI ++
  Kalax.0006s0195.1.p 114 RDAWTQEEELALIQAHQVYGNKTDNTIKNH 143
                          789*******************65555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.90127108IPR017877Myb-like domain
SMARTSM007173731110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-74576IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1291120IPR009057Homeodomain-like
SuperFamilySSF466895.01E-1892153IPR009057Homeodomain-like
PfamPF139217.0E-695123No hitNo description
PROSITE profilePS5129412.178109152IPR017930Myb domain
SMARTSM007170.0013113150IPR001005SANT/Myb domain
CDDcd001679.02E-5116145No hitNo description
Gene3DG3DSA:1.10.10.601.2E-5121150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MNHASQDGAG DRRSKMRPPH GRTTGPTRRS TKGQWTAEEL FLTEAESFKD RTDVQCLHRW  60
QKVLNPGLIK GPLSKESIWG KEMVHYRTAF DLPGRIGKQC RERWHNHLDP AINRDAWTQE  120
EELALIQAHQ VYGNKTDNTI KNHWNSSVKK KMETNIASGL LSKFQGLPHV GCWNQSLSSP  180
ASRTQQSSGD ESNHKGNDVE DISECSQAST APGCSQNASD MTKTIFHARC EESSEEYFAS  240
IEEVNMSIPE IERGAASDDQ FNLQEFSGMS LLELRQDQPY GSAANDINEM LYMPYHNSSS  300
MTASTSSGNM VDSFPSGTEG QDLVGSPCSE FLLTENFTEP LCNDGADYTD LHGHVDNIQF  360
AHDIPDGPAK LAEGAPLIDE LPAGKVEESE QESGSLFYEP PRFPSLDVPF FSCDLVSSND  420
LQQEYSPLGI PECTTLIDEL PAAKVEESEQ ESGSLFYEPP RFPSLDVPFF SCDLVSSNDL  480
QQEYSPLAIP EGAPLIDELP AGKVEESEQE SGSLFYEPPR FPSLDVPFFS CDHVSSNDLQ  540
QEYSPLGIPR ENSPDALLKS AAKTFSGNPS ILKKRHRDLS SPLSDRRKDK RLDSYSKQNS  600
FSSLAKQVVS GDDIKAIQNV VIALGHICAM ETSSVQLDVA LDLTFGLCRS KVKDVLFAAG  660
EALSFMWGGV PITPDEILRT NYTSLSMSLK FITRDVRSSL SRCEVDRETK NDDQIHVAVR  720
NSIRGKLFDE LLYNSRKEER RAGTVWLLSL TIFCGQHPSK HRLLPEIQVY HYVCFCLTKL  780
CFFEVFSYLI GEQMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-324515233159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-324515233159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1584591DRRKDKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9S7G74e-62MB3R1_ARATH; Transcription factor MYB3R-1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.12e-64Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]