PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0006s0006.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 464aa MW: 51476.3 Da PI: 5.4994 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.3 | 5e-07 | 272 | 306 | 16 | 55 |
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +N++f+ L++l+P++ K +K++ L ++ Y+k+L+ Kalax.0006s0006.3.p 272 LNERFSALQSLIPSN-----DKADKVTLLDATISYLKELE 306 8*************8.....7****************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.2E-9 | 8 | 44 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 11.211 | 256 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-5 | 260 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-10 | 271 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.27E-7 | 272 | 310 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.6E-11 | 272 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-4 | 272 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 464 aa Download sequence Send to blast |
MNFIRPSYLQ TVVCFPFSGG VVEIGITELV PEDMNLIERI KALFLDNFRP QSTVPDTSFP 60 SGLLNYDMEL AGVEPDHDYP EANLDPIVEC KELDSLSTYD SASNVAADQL ADSFMLTDGA 120 SQVQSWHFAD EDFSNCVHHS FNSSNCISQT FALSAKARLS PKIENLCEHH IPCPMERTKL 180 ESPDDLHYQG VISTLLKNSD LLDLDPRIGC CKKGSSFVKW SRVGRAGSSW SSNSMSQVML 240 RKVLFEVGRN TGCAPVDRTE AVDRYEHSLD VLNERFSALQ SLIPSNDKAD KVTLLDATIS 300 YLKELEKRVE KLESSKESTY LLNTPMATKP QVTVERTSDN YGNGTNRTSN KNKPSTNKRK 360 ASYIDQVEPQ NIAKTSRDNS TDVICVSMVD NNVMIEMRCC WRECLLFKVM DAMSGLGLDS 420 HMVQSSTSAN GILQLTIKSK FKGSGCPSVG VIRQKLQRIL AQS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41315.1 | 1e-72 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0006s0006.3.p |