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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Kalax.0005s0192.2.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
C3H |
| Protein Properties |
Length: 331aa MW: 37543.7 Da PI: 6.9308 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kalax.0005s0192.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 38.2 | 2.5e-12 | 192 | 217 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
y +C+++ +tG+C yGd+CkF+H+
Kalax.0005s0192.2.p 192 YQPDICKDYKETGYCGYGDSCKFMHD 217
67789********************7 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 2.35E-9 | 190 | 222 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-7 | 191 | 218 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.878 | 191 | 219 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.5E-10 | 192 | 217 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 192 | 222 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:3.30.40.10 | 4.4E-13 | 267 | 311 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| Pfam | PF13920 | 9.7E-9 | 269 | 310 | No hit | No description |
| SuperFamily | SSF57850 | 2.15E-12 | 269 | 313 | No hit | No description |
| PROSITE profile | PS50089 | 10.498 | 270 | 308 | IPR001841 | Zinc finger, RING-type |
| CDD | cd00162 | 9.03E-8 | 270 | 311 | No hit | No description |
| SMART | SM00184 | 2.7E-4 | 270 | 307 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 285 | 294 | IPR017907 | Zinc finger, RING-type, conserved site |
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MSEPKDQPDY AQRQPEPVCK FVKASARNKN FRKRTHDEDG DEDDEKGVES AVLSKRKQQK 60
DKGLIFSTGG SKQAADADNE GGDAKQPIFQ FESSKEIQVQ HDNKATATLE TETDFSMDAR 120
AIRERVLKQA EEALKGKKKG EGDEKLYKGI HGYTDYKAGF RREHTISSEK AGGSHGPLRA 180
SAHIRVSARF DYQPDICKDY KETGYCGYGD SCKFMHDRGD YKSGWQMERE WDEAEKERKR 240
KLALKALNSD EEDDEPGDED DDEDGLPFAC FICRKSFVDP VVTTCKHYFC EHCALKHHSK 300
NKKCFVCNKP TLGIFNTAHE IRKRMTSQGK *
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5z56_M | 1e-62 | 102 | 325 | 113 | 317 | RING finger protein 113A |
| 5z58_M | 1e-62 | 102 | 325 | 113 | 317 | RING finger protein 113A |
| 6ff4_t | 1e-62 | 102 | 325 | 113 | 317 | RING finger protein 113A |
| 6ff7_t | 1e-62 | 102 | 325 | 113 | 317 | RING finger protein 113A |
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