PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0005s0163.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 382aa    MW: 42284.8 Da    PI: 8.4848
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0005s0163.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05217236120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + C++C+k+F+r  n++ H+
  Kalax.0005s0163.2.p 217 FACSICTKTFNRYNNMQMHM 236
                          78*****************9 PP
2zf-C2H2140.00015301323123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +C+ksF  k + ++H +++
  Kalax.0005s0163.2.p 301 FMCRKCSKSFAVKGDWRTHEKNC 323
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-5208240No hitNo description
PROSITE profilePS5015710.45217244IPR007087Zinc finger, C2H2
SMARTSM003550.27217239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-5217236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SuperFamilySSF576675.98E-6283321No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4297321IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035556301321IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MRAIDHQGNS FYHVVEEAQS NGIMMSHSKQ SIISSLFQQS PPPTTFIEFK SPVPSASSSS  60
SASSSSNTQQ QPQMMAGPRF ADDHMRTSAL RCLPLLSKLM EDTSNNTPSS EAAIKDEQHE  120
EVDNSGGSFG IKRQGDDKVT VTLCIGLSTG SSTDYDLIKV YEDGVGSGAT DKRMGSSAVK  180
KRASCSLMDD CYTSSFNSES RFWIPTPVQI MVGPMQFACS ICTKTFNRYN NMQMHMWGHG  240
SEYRKGPDSL KGSQPAAMLR LPCYCCAPGC KNNINHPRAK PLKDFRTLQT HFKRKHGSKP  300
FMCRKCSKSF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK GHSPYPPMEG  360
FELGDKECAM TGSSEEDECL K*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872349.11e-131zinc finger protein WIP3
SwissprotQ9SGD11e-114ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLB9HQX31e-129B9HQX3_POPTR; C2H2 family protein
STRINGXP_009342737.11e-130(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-113WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]