PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0005s0052.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 109aa MW: 12095 Da PI: 4.3042

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0005s0052.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.5	4.7e-11	17	65	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 WT eEd+++ +a +++ +W+ + r mg+ +t +++++++q + Kalax.0005s0052.1.p 17 TWTREEDKRFEEALALHLDQdpstRWDNVVRQMGESKTVEEVIHHYQLL 65 7**************988************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.191	10	66	IPR017877	Myb-like domain
SMART	SM00717	3.7E-6	14	68	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.82E-9	16	73	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-8	16	64	IPR001005	SANT/Myb domain
CDD	cd00167	2.26E-7	17	66	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MSSSNNSNSP TPSKTTTWTR EEDKRFEEAL ALHLDQDPST RWDNVVRQMG ESKTVEEVIH 60 HYQLLVDDVN NIEAGRIALP DYMDDDSDEA LSTSSPPSNS NDKSRGGK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	5e-15	1	82	1	73	RADIALIS
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006423283.1	4e-20	protein RADIALIS-like 3
Refseq	XP_006469147.1	4e-20	protein RADIALIS-like 3
TrEMBL	A0A067E8G3	9e-19	A0A067E8G3_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PY89	9e-19	A0A2H5PY89_CITUN; Uncharacterized protein
TrEMBL	V4RQ20	9e-19	V4RQ20_9ROSI; Uncharacterized protein
STRING	XP_006469147.1	2e-19	(Citrus sinensis)
STRING	XP_006423283.1	2e-19	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.2	3e-18	RAD-like 6

Link Out ? help Back to Top
Phytozome	Kalax.0005s0052.1.p