PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0003s0100.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 394aa    MW: 45137.4 Da    PI: 5.667
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0003s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-17169215148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT eEd llv++v ++G + W+ Ia+ ++ gR +kqc++rw+++l
  Kalax.0003s0100.1.p 169 KGQWTHEEDMLLVQLVDRYGIRKWSIIAQLLP-GRIGKQCRERWHNHL 215
                          799*****************************.*************97 PP
2Myb_DNA-binding59.95.4e-19221263145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +++WT eEd++l++a+++lG++ W+ Ia++++ gRt++++k++w+
  Kalax.0003s0100.1.p 221 KDAWTREEDKILIEAHEELGNK-WAEIANRLP-GRTENSIKNHWN 263
                          689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.505164219IPR017930Myb domain
SuperFamilySSF466892.1E-31166262IPR009057Homeodomain-like
SMARTSM007171.7E-14168217IPR001005SANT/Myb domain
PfamPF002494.4E-16169215IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-23170220IPR009057Homeodomain-like
CDDcd001675.68E-14172215No hitNo description
SMARTSM007171.2E-17220268IPR001005SANT/Myb domain
PROSITE profilePS5129422.345220270IPR017930Myb domain
PfamPF002491.7E-17221263IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-21221269IPR009057Homeodomain-like
CDDcd001676.21E-14223266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDQFGAAKYE EAHPTHQMFV SDTLSKLPTA DGFPFEAVLL LPDNNFLDDN HQPNHQNFNT  60
WASVDKSFGL CQVSYLDPFD PYALESHQTG LSCEMLDRPA NKFYYDYIED IKPLNYVVPD  120
EFSCVTTNVD FTRYSADSNT AQESMIRVTS SVSSARKGPC KGKQSNVIKG QWTHEEDMLL  180
VQLVDRYGIR KWSIIAQLLP GRIGKQCRER WHNHLRANIK KDAWTREEDK ILIEAHEELG  240
NKWAEIANRL PGRTENSIKN HWNATKRKEY AKLKRRTKNP KPSSLLQEYI KSLKLGNNSS  300
LTGKQAGRSR KSSTNRRTIK KENELPPSGQ EQQVLVSVCD EFCPSDRLVP DYSDFGNVLP  360
DFDFDGSLFE ESNIESLLED MDIVVDCARD DNEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-441672692104C-Myb DNA-Binding Domain
1msf_C7e-441672692104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929442.16e-93transcription factor MYB98-like
TrEMBLA0A2N9HX418e-92A0A2N9HX41_FAGSY; Uncharacterized protein
STRINGEMJ123431e-90(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-78myb domain protein 98