PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0330.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 610aa    MW: 66214.5 Da    PI: 9.486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0330.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0583105123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k F r  nL+ H r H
  Kalax.0002s0330.4.p  83 FICEVCNKGFQREQNLQLHRRGH 105
                          89*******************88 PP
2zf-C2H212.40.00047159181123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H +t+
  Kalax.0002s0330.4.p 159 WKCDKCSKRYAVQSDWKAHSKTC 181
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-782105No hitNo description
Gene3DG3DSA:3.30.160.606.8E-682105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.0E-583105IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9983105IPR007087Zinc finger, C2H2
SMARTSM003550.005283105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355160124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4147180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-7154179No hitNo description
SMARTSM00355140159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAELRNMAAS HSSSLSFFGA SQDDHQQMMS NQQILQQQNS SAPPQQAATT PQKKRRNLPG  60
NPIDPDAEVI ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSTKEVK  120
RKVYLCPEPT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CDKCSKRYAV QSDWKAHSKT  180
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESSRHPSG LSTIGSHLYG TPDQMNLSLN  240
SQLPSAASML QPGTNTTRTP KFEHMNHISS YGGQQYPPQT VSSSGFFIND NPSSQGFHQD  300
QSQHGMSANK QPLFHGLLQI SDHGQGNNSP TALSNMFNLG YCAGNNATAT NNNGFSSAAN  360
INMAMPESLM RSEDHQVNNV ALGSSNFSSM YNTSTNSLQQ ADNMGLAPHM SATALLQKAA  420
QMGSTTSANN SSLLRGFASS TKSSDRSHPV RNTTTNLVSG NSARGVGENL QSSSSIMDSG  480
NNHLQSLMNS LANESSSVFK DGVHGQSGSF MSRMLTGSNN SGDHVHHQKN NMASNNNFGK  540
GIMSSENEHK LTLDFLGVGG MVRSSMSGGF SQRSGEMHQG VVEFNPLGDT DQLKPPAPAN  600
LSYAGGKLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33155219367Zinc finger protein JACKDAW
5b3h_F2e-33155219367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022735225.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_022735226.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A2K1YRN51e-173A0A2K1YRN5_POPTR; Uncharacterized protein
STRINGVIT_01s0010g02090.t011e-172(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-123indeterminate(ID)-domain 4