PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0329.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 596aa    MW: 65115.3 Da    PI: 7.9456
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0329.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-0578100123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k F r  nL+ H r H
  Kalax.0002s0329.1.p  78 FICEVCNKGFQREQNLQLHRRGH 100
                          89*******************88 PP
2zf-C2H211.80.00072155177123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Kalax.0002s0329.1.p 155 WKCDKCSKKYAVQSDWKAHSKTC 177
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-677100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.13E-877100No hitNo description
PfamPF121713.1E-578100IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.28178101IPR007087Zinc finger, C2H2
SMARTSM003550.005278100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355190120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.13E-8150175No hitNo description
SMARTSM00355150155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MTAAAEAGWF LGMREEEDEH QLQMNMHRQF QQSDPDANSS MATISDAPST QKKKRTQPDP  60
DAEVIALSPK TLMATNRFIC EVCNKGFQRE QNLQLHRRGH SLPWKLKQKS SKEVARKKVY  120
LCPEPSCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTK  180
EYRCDCGTLF SRRDSFMTHR AFCEALAQEN AMNPTNLSAI TSQLFGHSLV AANQISPHHQ  240
ELNFHKHSMQ HSDNLPAARS NGDGFRSFGS LLPPLNGSAF RPISTDIVFG SSSYHQDDQD  300
HHSPNKVFMT GMMQQLPQDQ IPSDHTDHSF FSNIASKNDS ESPTNNDSIS ISHLSSSNLF  360
ANRFSTSGGI GGSFNSAQGP TSGLFSGNTI MGDQISPSLY SSAVSLQNSN NASASAHLSA  420
TALLQKAAQV GSSCSINGSS ALLRSLGSSL SGPSSKLDLQ ASPRAIDFKA LLGDKDDKNL  480
HEMISSLGGG GSTTTSSMFG SLAKGLTGYN DEHQENSNSL CSTKLSFGKL LEEEYSKEQP  540
QNVFNDTLTR DFLGVGQIVR QLSGGFSQYD MMQLQQGHQV SSKTSIREGR EFGRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-32151211363Zinc finger protein JACKDAW
5b3h_F3e-32151211363Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104117KLKQKSSKEVARKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022735225.11e-146protein indeterminate-domain 5, chloroplastic-like
RefseqXP_022735226.11e-146protein indeterminate-domain 5, chloroplastic-like
TrEMBLU5G1I01e-138U5G1I0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s10950.11e-139(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.12e-96indeterminate(ID)-domain 5