PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0143.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 370aa    MW: 41716.9 Da    PI: 6.7988
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0143.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092923272055
                          HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +k +yps++e+  LA+++gL+ +q+ +WF N+R ++
  Kalax.0002s0143.2.p 292 YKWPYPSETEKMALAESTGLDHKQINNWFINQRKRH 327
                          5679*****************************885 PP
2ELK31.15.3e-11247268122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK +L++KYsgyL+sLkqE+s
  Kalax.0002s0143.2.p 247 ELKLHLMKKYSGYLSSLKQELS 268
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.5E-19100144IPR005540KNOX1
PfamPF037901.2E-20101143IPR005540KNOX1
SMARTSM012561.6E-25152203IPR005541KNOX2
PfamPF037913.8E-23156201IPR005541KNOX2
PfamPF037899.5E-8247268IPR005539ELK domain
PROSITE profilePS5121310.964247267IPR005539ELK domain
SMARTSM011889.2E-6247268IPR005539ELK domain
PROSITE profilePS5007113.005267330IPR001356Homeobox domain
SuperFamilySSF466891.54E-19268341IPR009057Homeodomain-like
SMARTSM003892.4E-11269334IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-27272331IPR009057Homeodomain-like
CDDcd000869.18E-12279331No hitNo description
PfamPF059203.4E-16287326IPR008422Homeobox KN domain
PROSITE patternPS000270305328IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MLLLSGEIMS SRFPRVFHIS IRSTSANAGP VAGPGAGSSS AFRHQYFQSD HHDSGVKREL  60
AVTTSQFLGQ QLHQNPIGII RENGGIERDD DQCPESDDAA AIKAKIMSHP QCSNLLEAYM  120
DCQKVGAPPQ VVAQLVAARE EFEKQQGSSS SSGKDISRDP ELDQFMEAYY DMLLKYREEL  180
TRPLQEAMDF MRRIESQLNM LGASPIRAYN PSDEKSSDGV GSSEEEGDNG GVTDQLPKID  240
PRAEDRELKL HLMKKYSGYL SSLKQELSKK RKKGKLPKEA RQKLLAWWEL HYKWPYPSET  300
EKMALAESTG LDHKQINNWF INQRKRHWKP SEDIQFMVMD GMHHQNASAL YMHGGHYMGP  360
DHCSYRTGP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262271LKQELSKKRK
2268272KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2406610.0EU240661.1 Kalanchoe x houghtonii knotted-like homeobox protein (KN5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027093057.11e-142homeotic protein knotted-1-like
RefseqXP_027150634.11e-142homeotic protein knotted-1
SwissprotO041351e-138KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLB1P1S10.0B1P1S1_9MAGN; Knotted-like homeobox protein
STRINGXP_006472353.11e-141(Citrus sinensis)
STRINGXP_006433688.11e-141(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-101KNOTTED-like from Arabidopsis thaliana