PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0002s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 384aa    MW: 42103.8 Da    PI: 8.2492
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0002s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.71.1e-53201471128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLkkkv++++l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  Kalax.0002s0024.1.p  20 LPPGFRFHPTDEELVVHYLKKKVASSPLPV-SIIAEVDLYKYDPWELPGKATFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 108
                          79****************************.89***************8888899*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+++ ++++vg+kk Lvfy g+ p+g+k++W+mheyrl
  Kalax.0002s0024.1.p 109 PVMTAsGTQKVGVKKALVFYGGKPPRGVKSNWIMHEYRL 147
                          ***9977888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-6417183IPR003441NAC domain
PROSITE profilePS5100562.28520183IPR003441NAC domain
PfamPF023652.5E-2821147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MESTDSSAGG GGSGSHHLNL PPGFRFHPTD EELVVHYLKK KVASSPLPVS IIAEVDLYKY  60
DPWELPGKAT FGEHEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPV MTASGTQKVG  120
VKKALVFYGG KPPRGVKSNW IMHEYRLVDN RTTSNNRHLA FDLASKKNSL RLDDWVLCRI  180
YKKSNSSKGI MDNEDDRPGD SSFMDEMILS SSVPPSLNVA GDNKFYLPNN ISSSSTFNNT  240
SAASLVDNGQ ALYERGLMST ASNNNNNNGS FSMSQLVSQS ANSFSLKRPL PHPHLFCWLD  300
GEQEQAAATM GGDHNGPPSK RGGHLLQGDT SLSAMVSLHN HQAQLQVPSQ TASLLHQLSH  360
VGDDESYRQH YPLAGASLNW YLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-741718612171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464756.11e-118NAC transcription factor 56
SwissprotQ9LD441e-102NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A072VB101e-117A0A072VB10_MEDTR; NAC transcription factor-like protein
STRINGcassava4.1_010976m1e-118(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-99NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]