PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kalax.0001s0118.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 495aa MW: 54973.3 Da PI: 4.8014

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0001s0118.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.8	3e-51	23	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 ppGfrFhPtdeelv +yLk+kv g++l+l ++i+e+d+yk++P dLp + k+k++++ w+fFs+rd+ky++g r+nrat++gyWkatgk Kalax.0001s0118.2.p 23 PPGFRFHPTDEELVLYYLKRKVCGRRLKL-DIIAETDVYKWDPVDLPgQsKLKTRDRLWFFFSPRDRKYPNGARSNRATHHGYWKATGKV 111 8**************************.99**********96358888999***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +++ vglkktLvfykgrap+g++tdWvmhey+l Kalax.0001s0118.2.p 112 RLITC-NSRPVGLKKTLVFYKGRAPTGTRTDWVMHEYTL 149 *.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-59	19	172	IPR003441	NAC domain
PROSITE profile	PS51005	54.219	22	172	IPR003441	NAC domain
Pfam	PF02365	2.4E-27	23	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MKMPSSSSSG TCSSRGNKKQ VWPPGFRFHP TDEELVLYYL KRKVCGRRLK LDIIAETDVY 60 KWDPVDLPGQ SKLKTRDRLW FFFSPRDRKY PNGARSNRAT HHGYWKATGK VRLITCNSRP 120 VGLKKTLVFY KGRAPTGTRT DWVMHEYTLH EEELKRCHDV GDSFALYKVY KKSGPGPKNG 180 EQYGAPFKEE DWDEEERTEV GFNTAVAGNF LGPHNIPKAD MVREGVNLIG SADEIEGVWN 240 SSTESRALLQ LQSADSFHQV VEAPDINSGP NVNELNDFLA DGDFLEAYDL LGPEPIPSGE 300 DNPLGNLWFD DTYDGLGEWD LFNDAGASDP NSVFNGFDGM MNNFEYRLES RLDDASIVTE 360 MWGNEDLCRN GVSVVQPGSI IEENTSISTL QDNQNQNGST SYPQNSFISA LWAFVESIPT 420 TPASASENIL FNQALDNVSS FSRAQFGDIN SLAAAGTIGP VRYNKSRSVI ILSVVGALCA 480 MLWLLIARQT VAAL*

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MKMPSSSSSG TCSSRGNKKQ VWPPGFRFHP TDEELVLYYL KRKVCGRRLK LDIIAETDVY  60
KWDPVDLPGQ SKLKTRDRLW FFFSPRDRKY PNGARSNRAT HHGYWKATGK VRLITCNSRP  120
VGLKKTLVFY KGRAPTGTRT DWVMHEYTLH EEELKRCHDV GDSFALYKVY KKSGPGPKNG  180
EQYGAPFKEE DWDEEERTEV GFNTAVAGNF LGPHNIPKAD MVREGVNLIG SADEIEGVWN  240
SSTESRALLQ LQSADSFHQV VEAPDINSGP NVNELNDFLA DGDFLEAYDL LGPEPIPSGE  300
DNPLGNLWFD DTYDGLGEWD LFNDAGASDP NSVFNGFDGM MNNFEYRLES RLDDASIVTE  360
MWGNEDLCRN GVSVVQPGSI IEENTSISTL QDNQNQNGST SYPQNSFISA LWAFVESIPT  420
TPASASENIL FNQALDNVSS FSRAQFGDIN SLAAAGTIGP VRYNKSRSVI ILSVVGALCA  480
MLWLLIARQT VAAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	23	178	18	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	23	178	18	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	23	178	18	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	23	178	18	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	23	178	21	174	NAC domain-containing protein 19
3swm_B	1e-47	23	178	21	174	NAC domain-containing protein 19
3swm_C	1e-47	23	178	21	174	NAC domain-containing protein 19
3swm_D	1e-47	23	178	21	174	NAC domain-containing protein 19
3swp_A	1e-47	23	178	21	174	NAC domain-containing protein 19
3swp_B	1e-47	23	178	21	174	NAC domain-containing protein 19
3swp_C	1e-47	23	178	21	174	NAC domain-containing protein 19
3swp_D	1e-47	23	178	21	174	NAC domain-containing protein 19
4dul_A	1e-47	23	178	18	171	NAC domain-containing protein 19
4dul_B	1e-47	23	178	18	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002265611.1	1e-145	PREDICTED: NAC domain-containing protein 17
TrEMBL	D7TFR5	1e-144	D7TFR5_VITVI; Uncharacterized protein
STRING	VIT_18s0001g01820.t01	1e-144	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	6e-85	NAC domain containing protein 17

Link Out ? help Back to Top
Phytozome	Kalax.0001s0118.2.p