PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp1250s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 25861.5 Da PI: 10.0003 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.5 | 3.9e-16 | 129 | 218 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k ++ps+v+ +l l +f+++h + ++ ++tl de+ +++ + ++ + l++GWk+F+ a++L +gD +vF+l++ + f Kaladp1250s0002.1.p 129 FVKPMLPSHVSGGFWLGLNVSFCKRHLPN--RDSEVTLIDEDDEEYPTVY--LPRKTG--LSGGWKGFAVAHDLTDGDALVFQLIKPTAF 212 89************************533..5569***************..555544..************************997888 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v + r Kaladp1250s0002.1.p 213 --KVYITR 218 ..776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-21 | 122 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-24 | 122 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.48E-27 | 127 | 218 | No hit | No description |
Pfam | PF02362 | 9.4E-14 | 129 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.8E-23 | 129 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.18 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MVQPEYEQSR QKRLEENRKR MEALNLPQLS QALRQFSPGL TTPPMKQRKP RAVEKKMVPV 60 RRSDRLSDKP GPVYLEVDVD RYDRVTIPRR VSKARDLSNQ VYASEEERSY SIKKAEEVQA 120 ALDATHPSFV KPMLPSHVSG GFWLGLNVSF CKRHLPNRDS EVTLIDEDDE EYPTVYLPRK 180 TGLSGGWKGF AVAHDLTDGD ALVFQLIKPT AFKVYITRAS GFKKTAA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010520114.1 | 1e-97 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 1e-73 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A2P5ASS8 | 2e-95 | A0A2P5ASS8_PARAD; B3 DNA binding domain containing protein | ||||
STRING | XP_010520114.1 | 5e-97 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 5e-76 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp1250s0002.1.p |
Publications ? help Back to Top | |||
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