PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1221s0008.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 316aa    MW: 34899.5 Da    PI: 7.9755
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1221s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.5e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg WT+eEd +l+ +++q+G+++W++I++  g+ R++k+c++rw +yl
  Kaladp1221s0008.1.p 14 RGQWTPEEDNKLAAYIAQYGTKNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                         89********************************************97 PP
2Myb_DNA-binding461.2e-1468110246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +T  E++ +v+++   G++ W++Ia+ ++ gRt++++k++w++
  Kaladp1221s0008.1.p  68 GQFTDAEEQTIVKVHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110
                          789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.5E-26564IPR009057Homeodomain-like
PROSITE profilePS5129426.35965IPR017930Myb domain
SuperFamilySSF466891.27E-2912108IPR009057Homeodomain-like
SMARTSM007171.1E-141363IPR001005SANT/Myb domain
PfamPF002491.9E-171461IPR001005SANT/Myb domain
CDDcd001673.50E-131761No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129420.86366116IPR017930Myb domain
SMARTSM007176.6E-1366114IPR001005SANT/Myb domain
PfamPF002495.5E-1368110IPR001005SANT/Myb domain
CDDcd001678.70E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGRIPCCEKD SVKRGQWTPE EDNKLAAYIA QYGTKNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF TDAEEQTIVK VHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLMAEIATTL NPPQVAHLAE AALGCFKDEM LHLLTKKPMD FQLQQSSAGQ  180
GNPFITNKIE QKEDTIEKIK LGLSRAIQEP GMIAASSKSH WGTSAGNFHG CFPESVPGFQ  240
YGGPSFGNSS PWNQSMCTGS TCTAGDQQGR FHDKLEDEIG QESEGGRDIR NSSAIFNSDC  300
VLWDLPSADL MNPMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268897.10.0PREDICTED: transcription factor MYB80
SwissprotQ7XQN11e-123MYB80_ORYSJ; Transcription factor MYB80
TrEMBLD7UAP50.0D7UAP5_VITVI; Uncharacterized protein
STRINGVIT_19s0015g01280.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-116myb domain protein 103