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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp1071s0023.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 462aa MW: 52263.6 Da PI: 4.4203 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 123.4 | 2.7e-38 | 100 | 461 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +lL + Aea ++++++l + + + + ++a p g++++Rl +y+ + +++ y+ l+ +++ + a+k+f++++P+ Kaladp1071s0023.1.p 100 AHLLKAHAEATEAEHTRLMEVIQTCVLDQAGPVGETTERLSFYLFKP--------QPQ-YSYLKQESQ-----PNFDVAYKAFYQLFPYG 175 68888999999999999999999999999999999999999996543........233.333333333.....3556789********** PP GRAS 92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 ++ h++aN+aIlea+ + + i+Dfd++ G+QW++L+++La ++++ l + +++ + + e t++rL++ A+++ +++ + Kaladp1071s0023.1.p 176 RVPHIAANSAILEALPAHaGTFNIVDFDMGDGVQWAPLIDTLARQNKE---LSLMAIKW---AEDDDFEDTRRRLESHARSVAAKLRVQE 259 ***************9887999*********************97665...88888888...46899**********************9 PP GRAS 181 lvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqeadhnse....sFlerflea 260 ++++ +++++ + r+ + a n++++l ++ ++ +e++ +++L + k+l + ++++ e ead n++ ++ f + Kaladp1071s0023.1.p 260 VAMEdLVSEVKRISKRCAQAPWFAFNCMVSLPHMI--KGRSEEKVRQFLTVAKDLlgdstNCGMITFGEGEADANKQtnlsNYSSFFERQ 347 9555256677777779999***************9..67777779*******976444448889*******9998885555677788899 PP GRAS 261 leyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349 l + al++s+e ++++++ e+++ +E +l+++i++ ++ e +++ ++ r++ + G++ ++l++++ ++a+ l+r+ ++ y Kaladp1071s0023.1.p 348 LARHQALLESVEWTFSEQQlEAKVAIECLFLAPSITSHGWLQKWE---HMNEEGNVRAAAATLGLEGLRLGQTTLTEANKLVRRGEDSSY 434 *****************9999999***********9987777776...77778899******************************8889 PP GRAS 350 rve..eesgslvlgWkdrpLvsvSaWr 374 ++ e+++++vl W++ pLv +S Wr Kaladp1071s0023.1.p 435 KLRlgEDENEMVLEWRGTPLVRLSTWR 461 98888*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 18.588 | 73 | 439 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.2E-36 | 100 | 461 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MDFNFLESLE FPWSTEESQN WVMEDFPPSL WSTEGSQSWD MEEEEELQQY AWNQVDGVLS 60 MDSSFSTQNS CTVEFGACDS GQVTMTNAPS ELACNELSLA HLLKAHAEAT EAEHTRLMEV 120 IQTCVLDQAG PVGETTERLS FYLFKPQPQY SYLKQESQPN FDVAYKAFYQ LFPYGRVPHI 180 AANSAILEAL PAHAGTFNIV DFDMGDGVQW APLIDTLARQ NKELSLMAIK WAEDDDFEDT 240 RRRLESHARS VAAKLRVQEV AMEDLVSEVK RISKRCAQAP WFAFNCMVSL PHMIKGRSEE 300 KVRQFLTVAK DLLGDSTNCG MITFGEGEAD ANKQTNLSNY SSFFERQLAR HQALLESVEW 360 TFSEQQLEAK VAIECLFLAP SITSHGWLQK WEHMNEEGNV RAAAATLGLE GLRLGQTTLT 420 EANKLVRRGE DSSYKLRLGE DENEMVLEWR GTPLVRLSTW R* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010653403.1 | 1e-118 | PREDICTED: nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A438GC47 | 1e-119 | A0A438GC47_VITVI; Nodulation-signaling pathway 2 protein | ||||
STRING | EOY07107 | 1e-115 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 7e-14 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp1071s0023.1.p |