PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1047s0006.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 694aa    MW: 76080.7 Da    PI: 6.509
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1047s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.18.8e-20554651296
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +kvl++sdv+++gr+vlpkk ae+h  ++  + ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++  +
  Kaladp1047s0006.1.p 554 QKVLKQSDVGSLGRIVLPKKEAETHlpQLTARDGINIAMEDiGTSNVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIY--S 640
                          79*************************999999********7778*******99777777777777.********************..6 PP

                          S.SEE..EEEE CS
                   B3  87 r.sefelvvkv 96 
                          + ++++++++ 
  Kaladp1047s0006.1.p 641 DiKCGKYMIRG 651
                          77999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-27547659IPR015300DNA-binding pseudobarrel domain
CDDcd100151.03E-33551652No hitNo description
SuperFamilySSF1019364.58E-22552646IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.5E-19553655IPR003340B3 DNA binding domain
PROSITE profilePS5086310.306553655IPR003340B3 DNA binding domain
PfamPF023624.9E-16554650IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MEMKDDTGVA EYEKSTDNLL HAAPLDAAGM EDNDVMLDLS CFGGGGYDSA AAAMEEADHQ  60
DLMDSAAAIF CDDLIPPLPD FQCMSSSSSS SSSVKPVAYQ STASSSVSST SSSWAVLRSE  120
SEEHNVAAGG YTSHHDHSHG HHPQQVVREQ SNGLDEDGDI GCMDVMETLS YIDLLDESGQ  180
VWGYKDSPVF YSSPVEAFQA ENELQRPEPM AETHTEGLDK SEDLAMVFFE WLKSNKESIS  240
AEDLRSIKLK KSTIESAAKR LGNGKEGMKR LLQLILEWVQ HHQLQRKPSR EEGVAAAAAQ  300
PQFPNHPYPD TNLSNSNFQP DLSHTSPWSV GSSAGLDPMM AVGVPAPFGH LSNMADQQWP  360
PLCMNYDNST NAGQNLTPAL HPFGAAAFNQ YPCQYYPAVG NVSYLNGAVS EEVFVRTGSA  420
ATKEARKKRM ARQRRFLPHH RHHHHHSSSG NGKAHGQHHG SNGLSNQMRM LTGAGQLGRV  480
NMDESCANIS HPPSGGYWAY LHNASPPQPP HLPVVPNSGN SIQGNEESPS YQRPIALDRR  540
QGSKPEKNLR FLLQKVLKQS DVGSLGRIVL PKKEAETHLP QLTARDGINI AMEDIGTSNV  600
WNMRYRFWPN NKSRMYLLEN TGDFVRSNGL QEGDFIVIYS DIKCGKYMIR GVKVRQQGPK  660
PDIRRSGKAL KKNTWPTSNG SPFAPPSPKT PLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A5e-375496571109B3 domain-containing transcription factor FUS3
6j9b_D5e-375496571109B3 domain-containing transcription factor FUS3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085841.11e-142B3 domain-containing transcription factor ABI3 isoform X2
RefseqXP_021679249.11e-142B3 domain-containing transcription factor ABI3-like
STRINGevm.model.supercontig_8.1871e-140(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.18e-38B3 family protein