PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0926s0002.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 543aa    MW: 60540.5 Da    PI: 5.2212
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0926s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS402.54.1e-1231735422374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl cA+avs+gdl+ a al+  l +++s +gdp+qRl +y++e+L+arl  s+s +yk+l+++e +   sse +++++++++++P+ 
  Kaladp0926s0002.1.p 173 NQLLLCCAQAVSDGDLSTAGALMDVLDQRVSISGDPVQRLGTYMLEGLRARLEMSGSAIYKSLKCTEPT---SSEMMSYMHVLYQMCPYW 259
                          689*****************************************************************9...99**************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf+++ aN aI eave+e ++Hi+Df+i qG QW+ Ll+aLa R++gpps+RiTgv++++s+  +   l+ +ge L+k+A+++++pf+f+
  Kaladp0926s0002.1.p 260 KFAYVSANTAIWEAVENEGKIHIVDFQIAQGSQWVDLLKALAIRQGGPPSVRITGVDDAQSTlaRGGGLHIVGEMLSKLAASCNIPFQFH 349
                          **********************************************************99999999************************ PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                            ++++++ l  e+L + pgEal+ n+ + lh+++desvs+e++rde+L++vksl Pkv+++veqe+++n++ F++rf e+l+yy+a+f+
  Kaladp0926s0002.1.p 350 EATMSDVKVL-RENLVIVPGEALVFNFPYVLHHVPDESVSTENYRDELLRMVKSLAPKVLTLVEQESNTNTSAFVHRFKETLDYYTAMFE 438
                          *888888887.89***************************************************************************** PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          s+++  +r++ +r + E ++++++i +++acegaer+erhe l+kWr+r++ aGF++ +ls  ++  +k +l+ ++ + +r+ee++g+l+
  Kaladp0926s0002.1.p 439 SMDVARSRDDAQRLNAEMHCVAKDIISMIACEGAERVERHELLAKWRARFNLAGFTQCTLSPAVTFYVKDMLKDFHTN-FRLEENKGALY 527
                          ****************************************************************************77.*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          l Wk+r++v++SaWr
  Kaladp0926s0002.1.p 528 LAWKNRAMVTCSAWR 542
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.863146523IPR005202Transcription factor GRAS
PfamPF035141.4E-120173542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MQTSQQRHLS GNFHSLYQKA ADPHHAPRFQ ILDSNMSSDI GSKGADLSFK TCDEQFFTLE  60
SFSPTDHLFV PYESPPQTVA SILSNPSPYS SQGSQSYSSD PRYSPDNAYG TPVSVYSAAN  120
SSNELKYKLM EMENVLMAPD DTSEADSYYC NGSASSVPMW SQLKEIVPQL DINQLLLCCA  180
QAVSDGDLST AGALMDVLDQ RVSISGDPVQ RLGTYMLEGL RARLEMSGSA IYKSLKCTEP  240
TSSEMMSYMH VLYQMCPYWK FAYVSANTAI WEAVENEGKI HIVDFQIAQG SQWVDLLKAL  300
AIRQGGPPSV RITGVDDAQS TLARGGGLHI VGEMLSKLAA SCNIPFQFHE ATMSDVKVLR  360
ENLVIVPGEA LVFNFPYVLH HVPDESVSTE NYRDELLRMV KSLAPKVLTL VEQESNTNTS  420
AFVHRFKETL DYYTAMFESM DVARSRDDAQ RLNAEMHCVA KDIISMIACE GAERVERHEL  480
LAKWRARFNL AGFTQCTLSP AVTFYVKDML KDFHTNFRLE ENKGALYLAW KNRAMVTCSA  540
WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-521725424375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449893.10.0scarecrow-like protein 13
RefseqXP_024047696.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2H5N5780.0A0A2H5N578_CITUN; Uncharacterized protein
TrEMBLV4WA260.0V4WA26_9ROSI; Uncharacterized protein
STRINGXP_006449893.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13