PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0878s0051.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 903aa MW: 98514.8 Da PI: 6.8178 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.3 | 1.6e-19 | 328 | 427 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kvl+ sd+++ grlvlpk +ae++ +++ e++ ++++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++ Kaladp0878s0051.1.p 328 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGTPIRIQDAKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSR-- 414 99**************************556667788***************9989999999***9.********************4.. PP S.SEE..EEEEE- CS B3 87 r.sefelvvkvfr 98 r +++lv++ ++ Kaladp0878s0051.1.p 415 RdPGGKLVIGSRK 427 4499999998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-29 | 323 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.36E-20 | 325 | 425 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.51E-23 | 326 | 423 | No hit | No description |
PROSITE profile | PS50863 | 11.462 | 328 | 429 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-20 | 328 | 428 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-16 | 328 | 427 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.487 | 584 | 634 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 7.8E-8 | 589 | 631 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 903 aa Download sequence Send to blast |
MGTAVCMNKS CRTSSSPEWK SGWPLRSGGL ATLCIDCGSA FENLVYCETF HSKESGWREC 60 DSCKKPIHCG CASSKPFIEF LDLGGACCTT CLKISGQHAN RGDEVSNDHS VQVLSNVGGL 120 QPNLGEVRIN GDIVGKGKNL QLGKSKIGGD PNGLHQIQNG ESNLSLGTMN GEDQSFGDLS 180 SNFLNLKSQS VGSPHFYIAG SNVTLGVPDG YEAIPQTSLN IGLSTPPDPS NFSAKFSSGV 240 VEGRELIKLP SPFQQSQRSR VILPKPSKCG LSLSADASKG MVQQPRVARP PAEGRGRNQL 300 LPRYWPRITD QELQQLSGDL NSPVVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQS 360 EGTPIRIQDA KGKEWTFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV IFSRRDPGGK 420 LVIGSRKASI SSDTQDGDIA ALANGAHGES SFSDVSAACG YSGTFQSMAK NRDPHMHALP 480 EQMTVADINL GWSKNNRHRG RIIESPIQKS MVKRPKNISS KSRRLLLHAE DVLELKLTWD 540 EAQDLLRAPP SIKPSIVTVE DHEIEEFEEP PVLAKKTIFT VGASGGQEQW AQCDFCSKWR 600 RLPVDVLLPL KWTCAENFWD SCRCSCSVPD EVGAKELENL LKHGKDLKRP RTLENHKLVQ 660 DHEPSGLDAL ASAAVLGDNA GEAGETSVGA TTKHPRHRPG CTCIVCIQPP SGKGKHHPTC 720 TCNVCMTVKR RFKTLMFRKR IRQSEREAEV SQKEPVLPKE NYELTNLKGD SRHEMLQSHP 780 VEADADRTTQ NLVQVDQSSD NSDRQLDLNS HPNRGSKCLE QEMNAAVSMT RLVHAAVLPL 840 ESHLKQHGLA NSTLDASGPP QTIEEGDYGV ADEDDTVQSG SDIKDEDRSS HANQDQNVDE 900 KP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-69 | 306 | 435 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017086.2 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 | ||||
Refseq | XP_017983611.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A061GYW3 | 0.0 | A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1 | ||||
STRING | EOY34705 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0878s0051.1.p |
Publications ? help Back to Top | |||
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