PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kaladp0878s0027.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 180aa MW: 19248.1 Da PI: 8.7656

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0878s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.7	9.1e-39	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca+ C+++pyf +p+kf +vh++FGasnv+kll ++pe r da+++lvyeA++r+rdPvyG++g i +lqqql +l Kaladp0878s0027.1.p 20 PCAACKLLRRRCAEACPFSPYFSPLEPHKFLAVHRVFGASNVSKLLLEAPEGLRADAANTLVYEANVRIRDPVYGCMGAIAALQQQLLSL 109 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +a+l+++++e Kaladp0878s0027.1.p 110 QAQLDAVRAE 119 ***99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.188	19	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-38	20	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MTEKREQVLG PEVALNKVTP CAACKLLRRR CAEACPFSPY FSPLEPHKFL AVHRVFGASN 60 VSKLLLEAPE GLRADAANTL VYEANVRIRD PVYGCMGAIA ALQQQLLSLQ AQLDAVRAEI 120 LKHDVKISQA AAASSAPSIS SKNSTIALAA ISNNNISIQT ATTHHHQGDH HLMRSSSAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-40	20	123	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-40	20	123	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021625453.1	2e-65	LOB domain-containing protein 15-like
Swissprot	Q9AT61	6e-60	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2C9V3A6	4e-64	A0A2C9V3A6_MANES; Uncharacterized protein
TrEMBL	A0A2P5AHJ8	5e-64	A0A2P5AHJ8_TREOI; Wilm's tumor protein
STRING	cassava4.1_029925m	7e-65	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-53	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Kaladp0878s0027.1.p

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]