PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0840s0019.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 469aa    MW: 50854.7 Da    PI: 8.2316
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0840s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.71.4e-36742262133
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec.e 74 
                           g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                +++s+s + +
  Kaladp0840s0019.1.p  74 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAADSIAELPSLtgpfpetprqlcdaklGFESSSVAaT 163
                          689*************************************************************99999888888888884444433332 PP

                  TCP  75 aesssssasnsssgkaaksaakskksqksaasalnlak.....esrakarararertrekmrik 133
                           +++  +++++++ + + s+  s+ s++s+ s  +l +     ++r +ar+rarer +ek + +
  Kaladp0840s0019.1.p 164 -AAEADASHTQQKMNVSMSKSASSTSETSKGSGISLTRtdarvNQRVRARERARERAKEKESET 226
                          .222222222222222222222223333333333333330114566777777777777776554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.3E-4075224IPR005333Transcription factor, TCP
PROSITE profilePS5136930.96676134IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDVEEFQSQI YTSKYPRVST TNNGGGGGDE DDAHDTPTRN HHSTVVAAEP QMLADSMFRG  60
WQHSSRIFRV SRASGGKDRH SKVLTSKGLR DRRVRLSVST AIQFYDLQDR LGYDQPSKAV  120
EWLIKAAADS IAELPSLTGP FPETPRQLCD AKLGFESSSV AATAAEADAS HTQQKMNVSM  180
SKSASSTSET SKGSGISLTR TDARVNQRVR ARERARERAK EKESETEQAV VNAGQRRRQS  240
GGNPISHPTT NNNNSSSFTE LLTGAIGGNQ TGSSPNSAPM MMDYFTNVAR PTLGSHHHHQ  300
AAAACLFLGQ TQMGNSINMP QAFHLTTGEH HNHHQQQHHG LQHFSFGQEN LIPAGNEYDL  360
NFTISSSSPS SLAGFNNRGT LQSNSPPAAS PSSLLHHSNQ QLQRYAASME GSNNVVPAFF  420
MTTASASSAM ETNHQHHHFP TGLDGRLHLY YGDGGGRHCD HKDGKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-2481135155Putative transcription factor PCF6
5zkt_B7e-2481135155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207219RVRARERARERAK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875888.11e-114transcription factor TCP2
RefseqXP_015875894.11e-114transcription factor TCP2
RefseqXP_015875904.11e-114transcription factor TCP2
TrEMBLW9QCB81e-104W9QCB8_9ROSA; Uncharacterized protein
STRINGXP_010086998.11e-105(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.29e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2