PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0778s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 221aa MW: 25213.7 Da PI: 7.9749 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 49 | 93 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++ +Ed+ll +++k+lG++ ++Ia +++ gRt++++k++w+k+ Kaladp0778s0001.1.p 49 RGEFSLDEDDLLMRLHKLLGNR-RSLIAGRLP-GRTANDVKNHWNKH 93 899*******************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.08E-13 | 21 | 98 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 41 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.46 | 44 | 98 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-11 | 48 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-12 | 49 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.04E-9 | 51 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MATDDDGARR YGVRKGAWRL NRCRKSCSLR WLNLLYIILG NYPKPYIKRG EFSLDEDDLL 60 MRLHKLLGNR RSLIAGRLPG RTANDVKNHW NKHFRKKTAS GQRFSTDIGK SIIITPTTST 120 AASKEGHDHM TSFDLFSTKE DVLEQMQCWK SLLDDQVSDQ EVAAVSSGSC SVEAQKPENG 180 LTELSFDIEM WDFLDDEWLA VTTRKKMWIA MAFDLSLFDL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256541.1 | 3e-35 | PREDICTED: transcription factor MYB113-like | ||||
Swissprot | Q9FNV9 | 1e-29 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A3G8FWW7 | 1e-35 | A0A3G8FWW7_9SOLA; MYB transcription factor AN2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-30 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0778s0001.1.p |
Publications ? help Back to Top | |||
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