PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0756s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 191aa MW: 21459.6 Da PI: 10.0847 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53 | 6e-17 | 92 | 181 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+++ps+v+ +l l +f+++h + ++ ++tl de+ +++ + ++ + l++GWk+F+ a+gL +gD +vF+l++ + f Kaladp0756s0011.1.p 92 FVKTMLPSHVSGGFWLGLNVSFCKRHLPN--RDSEVTLIDEDDEEYPTVY--LPRKTG--LSGGWKGFAVAHGLTDGDALVFQLIKPTAF 175 89************************533..5569***************..555544..************************997888 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v + r Kaladp0756s0011.1.p 176 --KVYITR 181 ..776665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.16E-24 | 85 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-22 | 85 | 183 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.69E-26 | 90 | 181 | No hit | No description |
Pfam | PF02362 | 9.5E-15 | 92 | 181 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-23 | 92 | 183 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.561 | 92 | 183 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MFHGCLQMKQ RKPRTVEKKM VPVRRSDRLS DKPGPVYLEV DVARYDRVTI PRRVSKARDL 60 SNRVYASEEE RSYSIKKAEE VQAALDATHP SFVKTMLPSH VSGGFWLGLN VSFCKRHLPN 120 RDSEVTLIDE DDEEYPTVYL PRKTGLSGGW KGFAVAHGLT DGDALVFQLI KPTAFKVYIT 180 RASGFKKTAA * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010520114.1 | 5e-81 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 8e-58 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A1U8KMB4 | 6e-79 | A0A1U8KMB4_GOSHI; B3 domain-containing protein At5g42700-like isoform X1 | ||||
STRING | XP_010520114.1 | 2e-80 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-60 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0756s0011.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|