PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0756s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 198aa MW: 22763.4 Da PI: 9.6907 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.5 | 1.2e-18 | 21 | 111 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv+++ + +s+r+ +pk f+e +++++ee+ +l +sg++W+v + kk + ++ +GWk F ++n + e Df+vF++ g+++f Kaladp0756s0002.1.p 21 FFKVFIRQY--NSDRMLIPKGFMEGIMKQEEEG-CASLVGPSGEKWRVSI--IKKEAKWFIDEGWKVFWEDNSIAETDFLVFTYAGKMKF 105 889995555..56789**********7776665.89**************..78888889*************************99999 PP ..EEEEE- CS B3 91 elvvkvfr 98 +vk+f Kaladp0756s0002.1.p 106 --YVKIFG 111 ..999985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-21 | 17 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-20 | 17 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.30E-14 | 19 | 110 | No hit | No description |
PROSITE profile | PS50863 | 12.534 | 19 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-13 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-16 | 21 | 110 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MSGDDALGGR FKRGEYHRPM FFKVFIRQYN SDRMLIPKGF MEGIMKQEEE GCASLVGPSG 60 EKWRVSIIKK EAKWFIDEGW KVFWEDNSIA ETDFLVFTYA GKMKFYVKIF GPHGCQKPSA 120 HLAKCTKDNR STFTASQQKV RVPEKKPRGR PHLVTAEERR VADLSLQNIH FLLELCTGRL 180 TNHQFCICRE VFSTGML* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06160.2 | 9e-15 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0756s0002.1.p |