PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0708s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 217aa MW: 23992.6 Da PI: 9.2568 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.6 | 9e-13 | 1 | 57 | 36 | 96 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++l +e+g sW+v++ + g+y l +GW+ Fv +ng++ gD++ Fkl++ + e++v+v Kaladp0708s0001.1.p 1 MVLHTETGSSWSVNI--VANTGGYKLCGGWSAFVIDNGINKGDICEFKLMS--RLEMWVQV 57 57899**********..99999**************************986..67778876 PP | |||||||
2 | B3 | 58.5 | 1.2e-18 | 112 | 201 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ++++ + +v ++l +p +f++e++++ ++ +++l++e+g sW+v++ + g+y + +GW+ Fv++ng+k gD++ Fkl++r + Kaladp0708s0001.1.p 112 LTKMQRYNVEYVRILNIPMHFVRENSLSYCTDEKMVLRTETGSSWSVNV--VANMGGYKMCGGWSAFVSDNGIKKGDVCEFKLMSR--LK 197 555545555555889**********888888889***************..99999**************************9874..44 PP .EEE CS B3 92 lvvk 95 ++v Kaladp0708s0001.1.p 198 MRVE 201 4555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.45E-12 | 1 | 57 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-12 | 1 | 57 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.8E-10 | 1 | 57 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.07E-9 | 1 | 57 | No hit | No description |
PROSITE profile | PS50863 | 12.985 | 1 | 61 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-21 | 106 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.73E-18 | 109 | 200 | No hit | No description |
SuperFamily | SSF101936 | 1.57E-19 | 109 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-16 | 111 | 200 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.479 | 111 | 206 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.3E-12 | 111 | 206 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MVLHTETGSS WSVNIVANTG GYKLCGGWSA FVIDNGINKG DICEFKLMSR LEMWVQVTPD 60 PKVASRTSRN GPPSCLPRNA EVKLRTVKPE LEHVIQNALK AADASSIGPS FLTKMQRYNV 120 EYVRILNIPM HFVRENSLSY CTDEKMVLRT ETGSSWSVNV VANMGGYKMC GGWSAFVSDN 180 GIKKGDVCEF KLMSRLKMRV EVTPNSKSAG EESRKGS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 2e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0708s0001.1.p |