PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Kaladp0674s0117.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 200aa MW: 21809.7 Da PI: 8.7194

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0674s0117.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.4	1.6e-13	24	68	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE++ ++ + k+ G+g+W+ I++ + k Rt+ q+ s+ qky Kaladp0674s0117.1.p 24 PWSEEEHKCFLTGLKKVGKGDWRGISKNFVKSRTPTQVASHAQKY 68 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.998	17	73	IPR017930	Myb domain
SMART	SM00717	6.5E-10	21	71	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.09E-15	23	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.9E-16	23	71	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	7.2E-11	23	67	IPR009057	Homeodomain-like
Pfam	PF00249	5.3E-11	24	68	IPR001005	SANT/Myb domain
CDD	cd00167	1.63E-9	24	69	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MIMIVSFVYC WDVCYVGFIC AGTPWSEEEH KCFLTGLKKV GKGDWRGISK NFVKSRTPTQ 60 VASHAQKYFL RHNTVKHRRR TSLFDITAET VSGQPTEELC EATLRDSASS QIHSPATNSP 120 NAVVQPLVDP SSVLTQHPLL IHPSPPPALQ SVPSPNSSSP ANYSLNLSLS LSSYSQTSPY 180 RALQTTPGLT TKDSYISVA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001281003.1	3e-37	transcription factor MYB1R1-like
TrEMBL	D9ZJ86	8e-36	D9ZJ86_MALDO; MYBR domain class transcription factor
STRING	XP_008374494.1	1e-36	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	3e-30	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kaladp0674s0117.1.p