PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0574s0015.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 412aa    MW: 44913.2 Da    PI: 9.3024
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0574s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-1558102147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +WT+eE++++++a k++G   W+ I  ++g ++t+ q++s+ qk+
  Kaladp0574s0015.1.p  58 REKWTEEEHQKFIEALKLFGRA-WRQIEDYIG-TKTAVQIRSHAQKF 102
                          789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.92E-1552108IPR009057Homeodomain-like
PROSITE profilePS5129420.67753107IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-955110IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1656105IPR006447Myb domain, plants
SMARTSM007171.1E-1257105IPR001005SANT/Myb domain
PfamPF002492.0E-1358101IPR001005SANT/Myb domain
CDDcd001679.02E-1060103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MKVDLAMATV QKPTSGIGNS ITSIATGSNS HSVSCETNLD GSGVALKVRK PYTISKQREK  60
WTEEEHQKFI EALKLFGRAW RQIEDYIGTK TAVQIRSHAQ KFFSKVTKEG ANSVEASNEA  120
IKIPPPRPKR KPSHPYPRKL AEAPNKSCPN IQENGTSSNL KTMERKAQSP TSVLSPEGSH  180
TSTPHLKGQG SGSVTPTSSG SNLSHVLDMD RLTKNNSTLE EKERDISLTL TLSVPSLNAS  240
TIMHAGKEFK GAELTNDDGV YLEAETMFVG GGDTPLTTIK LFGHTVVVAK PLELSAGMEN  300
VVSHTATRDL LMFSDLHLNP LVSKGSHAYV SSPGLGLGLD GQLVPTIKWC RFSTIFNLSI  360
KLLISSPEYM IRWEPSSMIH VYILMTFSQT NRACTFFTDR TCLVALDVIP R*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_007152597.13e-46(Phaseolus vulgaris)
STRINGXP_004299482.13e-46(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-35MYB_related family protein