PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0574s0002.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 346aa MW: 38323.4 Da PI: 8.1135 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90 | 5.2e-28 | 52 | 136 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk i+WL+ k+ i++l+ ++ ++ + + ++s +++n++ Kaladp0574s0002.3.p 52 SGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVIDWLIDSTKEDIDKLPPLQLPQG-SLgQFLQQSIMSHNDQ 136 579*************************************************************44444.2222222222222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.9E-27 | 53 | 205 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.697 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 346 aa Download sequence Send to blast |
MTSSESRELV PAAKQEESAD LAYNSKLGNA KTSSRQWSGF RNPRIVRVSQ SSGGKDRHSK 60 VCTVRGLRDR RIRLSVPTAI QLYDLQERLG LSQPSKVIDW LIDSTKEDID KLPPLQLPQG 120 SLGQFLQQSI MSHNDQIAAA PNRNSSFPLL FDANSGMFAC KDNWININNN AHMQDPDMVG 180 ERSKYWDYLD AASKAKSKEI ERDNELINQA EKERWMETNS QHGNHFQGLK GYNNISQASA 240 QNFFPVAGGS PLLGSNGTSV DNNPYNQSWD PSSTPSLAQL GSRGISSMHQ AHNVQNNCNL 300 LSSSSSAFDP RQINSLFHLL TSTSPIKSFQ QNSANPKFHS QDVDN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-18 | 59 | 113 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010663449.1 | 3e-80 | PREDICTED: transcription factor TCP5 | ||||
Refseq | XP_019082201.1 | 3e-80 | PREDICTED: transcription factor TCP5 | ||||
Refseq | XP_019082202.1 | 3e-80 | PREDICTED: transcription factor TCP5 | ||||
TrEMBL | A0A438I3C8 | 6e-79 | A0A438I3C8_VITVI; Transcription factor TCP5 | ||||
STRING | EOY22094 | 2e-76 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60970.1 | 5e-40 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0574s0002.3.p |