PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0574s0002.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 382aa    MW: 42057.6 Da    PI: 7.637
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0574s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP89.76.3e-2852167289
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesss 79 
                           g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk i+WL+   k+ i++l+ +            +    s ++++++ 
  Kaladp0574s0002.1.p  52 SGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVIDWLIDSTKEDIDKLPPLqlpqgslgqflqQ----SIMSHNDQI 137
                          579*************************************************************5544444422220....222333333 PP

                  TCP  80 ssasnsssg....................k 89 
                           +a n +s+                     
  Kaladp0574s0002.1.p 138 AAAPNRNSSfpllfdansgmfackdnwinI 167
                          333333333566666555555555555541 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.5E-2753205IPR005333Transcription factor, TCP
PROSITE profilePS5136928.69754112IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MTSSESRELV PAAKQEESAD LAYNSKLGNA KTSSRQWSGF RNPRIVRVSQ SSGGKDRHSK  60
VCTVRGLRDR RIRLSVPTAI QLYDLQERLG LSQPSKVIDW LIDSTKEDID KLPPLQLPQG  120
SLGQFLQQSI MSHNDQIAAA PNRNSSFPLL FDANSGMFAC KDNWININNN AHMQDPDMVG  180
ERSKYWDYLD AASKAKSKEI ERDNELINQA EKERWMETNS QHGNHFQGLK GYNNISQASA  240
QNFFPVAGGS PLLGSNGTSV DNNPYNQSWD PSSTPSLAQL GSRGISSMHQ AHNVQNNCNL  300
LSSSSSAFGA LPSAGPQLFF CPAPNSSFFP VTTYAPYTTT SLEADPRQIN SLFHLLTSTS  360
PIKSFQQNSA NPKFHSQDVD N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1859113155Putative transcription factor PCF6
5zkt_B2e-1859113155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663449.13e-92PREDICTED: transcription factor TCP5
RefseqXP_019082201.13e-92PREDICTED: transcription factor TCP5
RefseqXP_019082202.13e-92PREDICTED: transcription factor TCP5
TrEMBLA0A438I3C87e-91A0A438I3C8_VITVI; Transcription factor TCP5
STRINGEOY220949e-87(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.19e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5