PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0496s0018.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 715aa    MW: 77548.5 Da    PI: 6.7263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0496s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-152468147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  Kaladp0496s0018.1.p 24 RERWTEEEHGRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                         78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-171874IPR009057Homeodomain-like
PROSITE profilePS5129419.2451973IPR017930Myb domain
TIGRFAMsTIGR015579.4E-172271IPR006447Myb domain, plants
SMARTSM007171.0E-102371IPR001005SANT/Myb domain
PfamPF002492.8E-122467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-82464IPR009057Homeodomain-like
CDDcd001672.79E-82669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010243Biological Processresponse to organonitrogen compound
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MDLCSSGEEL VIKSRKPYTI SKQRERWTEE EHGRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFL KLEKDASGKG VLISEVHHID IPPPRPKKKP NNPYPRKISV VVPTLTVEAK  120
DGKKSIPISS CPVKQVQEPH NGVLQEKPGG KETLDTSCTS VSLSHRVEKM HEDEPNQHPD  180
QDGTELTTMR KDSSENRNLE MLQASPDSVV QCVNLKWDKS QTCSTQASTE ATQSYPGKVP  240
VNAVGSSPEP FRLSSHPFFY QFLPDQLGGT AFSPNDFTSS DASATREPKC PSEMIGPSNS  300
PITPFFLNHE DAYRAYLQFS SAFSNLVVST LQQNPAAYAA AGVAAASFWP NINAEAPAGY  360
CGGFPMKVMD TGGASPSITA ITAATVAAAT AWWASNGLIP FCASQQSLTH SQSCFTTNNV  420
VPHAAARTRT VTDEKSHQDT TVSQDQQAEV VNSPTFPGRN SAFKPLTTVL EKSEESQVMV  480
MDKQVPPTAV ISKNKSAAMD VEIQGSNTDL KDGKKLDRSS SGSNTTSSTE LEETDVLEKH  540
ESGNEESNAP DDAHSIGDSS NRRGRNVPNA NESWKEVSEE GRVAFQALFS RQVLPQKFSS  600
SAGLVTLETH ANTDQESKLK LGGVASPIDL NSDILVSCSA DGVVKTNGKV RAECEGQEIL  660
HSIGVGKLRT HKTGFKPYKR SSVEPKDISV PNCCSQGKDK RLKRMCLEGG EASA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00103PBMTransfer from AT2G46830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787180.0KM078718.1 Kalanchoe fedtschenkoi isolate 2 circadian clock-associated 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A089YMJ30.0A0A089YMJ3_KALFE; Circadian clock-associated 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.31e-39MYB_related family protein