PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0489s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 22789.3 Da PI: 7.9571 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.2 | 1.1e-16 | 39 | 88 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f++Lr+l+P++ ++K + a+ L ++++Y+++Lq Kaladp0489s0004.1.p 39 RSKHSVTEQRRRSKINERFQRLRDLIPNS----DQKRDTASFLLEVIDYVQYLQ 88 899*************************9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.6E-22 | 34 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-19 | 35 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.71 | 37 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.99E-15 | 39 | 88 | No hit | No description |
Pfam | PF00010 | 5.1E-14 | 39 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-11 | 43 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MRSGVKNSNE EEDYGEEDQG GNQSKRDGKG SASKANATRS KHSVTEQRRR SKINERFQRL 60 RDLIPNSDQK RDTASFLLEV IDYVQYLQGE MQKYEGPYQP WSAEPAKLMP WRNSHWRTQS 120 IAPQPLGNGV GAGYAPKFND TSQSTLLGHP HEFSEPDALA DPTEMKEELL GVAFKRRFLC 180 NSKTCVNQTG SELGLQARSC FC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007045739.2 | 4e-54 | PREDICTED: transcription factor BIM2 | ||||
Refseq | XP_019164681.1 | 4e-54 | PREDICTED: transcription factor BIM2 isoform X1 | ||||
Refseq | XP_019164682.1 | 4e-54 | PREDICTED: transcription factor BIM2 isoform X1 | ||||
Refseq | XP_019164683.1 | 4e-54 | PREDICTED: transcription factor BIM2 isoform X1 | ||||
Refseq | XP_019164684.1 | 4e-54 | PREDICTED: transcription factor BIM2 isoform X1 | ||||
Refseq | XP_019164685.1 | 4e-54 | PREDICTED: transcription factor BIM2 isoform X1 | ||||
Refseq | XP_019164686.1 | 4e-54 | PREDICTED: transcription factor BIM2 isoform X2 | ||||
Swissprot | Q9CAA4 | 2e-54 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A061E9E2 | 7e-53 | A0A061E9E2_THECC; BES1-interacting Myc-like protein 2 | ||||
STRING | EOY01571 | 1e-53 | (Theobroma cacao) | ||||
STRING | Bostr.10273s0468.1.p | 1e-53 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-51 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0489s0004.1.p |
Publications ? help Back to Top | |||
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