PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0487s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 768aa MW: 85318.2 Da PI: 4.7122 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 340.2 | 3.6e-104 | 428 | 764 | 1 | 339 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+avss+d + a++lL ++++ asp gd +qRla++f+++L+ar+a++++++y + ++++ + ++ l+a++++ ++ P+ Kaladp0487s0001.1.p 428 LRTLLVLCAQAVSSDDWRTANQLLRQIRQYASPLGDGTQRLAHCFANGLEARMAGTGNQIYTSRSSRRIT---AADILKAYQVYLHAIPF 514 5789*********************************************************887777777...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 ++ aNq+I +a+++++++Hi+Df+i +G+QWp ++q L+ R++gpp+lRiTg++ p++g +e++eetg+rL+k+++++gvpfe+ Kaladp0487s0001.1.p 515 KQIVMSFANQMIFQAASKAQTLHIVDFGILYGFQWPIFIQCLSRREGGPPKLRITGIDLPQPGfrPAERVEETGRRLEKYCKRFGVPFEY 604 **************************************************************9*************************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + +ak+++++++e+L++k++E laVn+ ++l++llde+v+ +s+r++vL+l+++++P+++++ + ++n++ F++rf eal yysalf Kaladp0487s0001.1.p 605 YA-IAKKWDTIRIEDLSIKRNEFLAVNCLFRLKNLLDETVDDTSPRNAVLSLIREMNPDIFTHGIANGSYNAPFFVTRFREALFYYSALF 693 **.7************************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 d ++a++pr+++er + E el g+++ nv+aceg er+er et+++W+ r ++aGF+++pl+++++++ + Kaladp0487s0001.1.p 694 DVFDATIPRDNQERLMFEGELYGKDAINVIACEGVERVERPETYKQWQVRCNRAGFRQLPLDKEVMTKLRN 764 *****************************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.58 | 402 | 768 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-101 | 428 | 764 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 768 aa Download sequence Send to blast |
MVMDPYLNGF RGFDDDDDKG VAEFDSFAGN EIHLADGGVG SLDFIDSLIV SPFRGGHGGA 60 AADSTLPFFG MSPQRDSVSG EGGDLSDPVF KYINQMLMEE DMGEKAWMLH DSLALSVAEK 120 SLYDALGEKY PDRPSVLVDS PDGSTSQSFG FSESSSSGSS NANGASYALN DAYQSDHVPP 180 YQPVSLTQNS VPAADVSQPS SFGTGKGFPL RGFDQGVNDF ESNSSSLKGS GSGNSYSSTF 240 NGFDLNGNGL GNAPLSSFQA SEIFNDSEYI MQFQRGVEEA SKFLPKTSNL IIDLDKYQPV 300 VPEPNEVGLL ASAGRSYEDE DKSFVNGFPA AEAEKNVKES SANGSRGNRS RGRKRGEIEM 360 EDERMNKQSA VYVDEEELSV MFDNVLLHCR VKEEAPDSDV CERSPSEKNR NLNETGRDKK 420 QGTDAVDLRT LLVLCAQAVS SDDWRTANQL LRQIRQYASP LGDGTQRLAH CFANGLEARM 480 AGTGNQIYTS RSSRRITAAD ILKAYQVYLH AIPFKQIVMS FANQMIFQAA SKAQTLHIVD 540 FGILYGFQWP IFIQCLSRRE GGPPKLRITG IDLPQPGFRP AERVEETGRR LEKYCKRFGV 600 PFEYYAIAKK WDTIRIEDLS IKRNEFLAVN CLFRLKNLLD ETVDDTSPRN AVLSLIREMN 660 PDIFTHGIAN GSYNAPFFVT RFREALFYYS ALFDVFDATI PRDNQERLMF EGELYGKDAI 720 NVIACEGVER VERPETYKQW QVRCNRAGFR QLPLDKEVMT KLRNKMEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-47 | 435 | 761 | 26 | 341 | Protein SCARECROW |
5b3h_A | 6e-47 | 435 | 761 | 25 | 340 | Protein SCARECROW |
5b3h_D | 6e-47 | 435 | 761 | 25 | 340 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018836067.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A314ZFC9 | 0.0 | A0A314ZFC9_PRUYE; Scarecrow-like protein 14 | ||||
STRING | POPTR_0009s03800.1 | 0.0 | (Populus trichocarpa) | ||||
STRING | XP_007132057.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0487s0001.1.p |
Publications ? help Back to Top | |||
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