PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Kaladp0441s0001.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 227aa MW: 25511.5 Da PI: 7.5033

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0441s0001.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.8e-17	26	70	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Kaladp0441s0001.2.p 26 RGNISEDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 70 7899****************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.623	1	20	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.2E-11	6	32	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.01E-20	6	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.871	21	75	IPR017930	Myb domain
SMART	SM00717	4.8E-16	25	73	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-15	26	70	IPR001005	SANT/Myb domain
CDD	cd00167	7.06E-13	30	71	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.4E-21	33	71	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSAGLNRCGK SCRLRWLNYL RPDIKRGNIS EDEEELIIRL HKLLGNRWSL IAGRLPGRTD 60 NEIKNYWNTT LGKKVGSEVS QRSSSKKGKM SKSKETSKAV PEPDSSTQPL TQPIRTKAFR 120 CTKVHIPATI HSPREDYNKH EDTKPTHSQS AQQTSSPDSG EYVVDFSQFL DFGSDEFQGI 180 DTCMGFNGQF DVPVTKDWMR SDISGLENSS MELESLGFLL DGEGWY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-21	7	77	40	110	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008220562.1	7e-60	PREDICTED: myb-related protein Zm38-like
TrEMBL	A0A2N9ET87	5e-60	A0A2N9ET87_FAGSY; Uncharacterized protein
STRING	XP_008220562.1	3e-59	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	1e-40	MYB family protein

Link Out ? help Back to Top
Phytozome	Kaladp0441s0001.2.p