PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0427s0033.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CPP
Protein Properties Length: 776aa    MW: 84964.8 Da    PI: 7.3318
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0427s0033.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.73.6e-16477515240
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  Kaladp0427s0033.2.p 477 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCACQDCHNKP 515
                          689**********************************96 PP
2TCR49.11.1e-15562601140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          ++k+gCnCkks+ClkkYCeC+++g+ Cs +C+Ce+C+N+ 
  Kaladp0427s0033.2.p 562 RHKRGCNCKKSSCLKKYCECYQSGVGCSLNCRCESCQNTY 601
                          589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.5E-18476517IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.463477602IPR005172CRC domain
PfamPF036384.7E-12479514IPR005172CRC domain
SMARTSM011147.4E-16562603IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.9E-11564600IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MDTPQKNRTG TPGSKIEESP VFNYLSNLSP IKPVKSIHIS QSFTSLNLTS PSSVFTSPHI  60
ISSFKDSAFL KRHRFSDQSR ASDFDEGTKD SSKEEFVGSC QLPDNAVNKD FDLEHPVTEV  120
DTNHGQQSEV PKVLPRTLEY DYGTPACETK SPLFTDQRDE DSAEASGSIA SFAQGTVRES  180
SDKSDGVPGT FQNTPHRERL RLHWDNLATD AADSLFINSP NEAMAFRRLL DKSPDNEENP  240
GSLASLFPDN INELRLAQPV DQVDFVGVGM AQQVNRVKDS QPQYLDWPPE ITPCHVEKGT  300
DNNSSDDQLG SNSHQGVRRR CLTFETAGGH RKSSTSVANR LPDVPLQPEE KGTSRFKQSI  360
PSKPVSAYSS QLVKSGIGLH LNALATAKDK QILLPEHHPA GVEIGVSSSK TSFYPATSQE  420
SPRVALDTGS YVSSGPLRTD TQVSEDDSIA VAPSEELNSA SPRKKRPKLA HAGDDESCKR  480
CNCKKSKCLK LYCECFAAGV YCIEPCACQD CHNKPIHEDT VLATRKQIES RNPLAFAPRV  540
IRASQALPDV GDETANTPAS ARHKRGCNCK KSSCLKKYCE CYQSGVGCSL NCRCESCQNT  600
YGRKDGSEVD LEVEVEAAEE EPQPTEKSVV DRGLEKAALH KHEERNLDPS FPATPSRLSR  660
LAVKLQFPSK GKPMRSSFLS IGSSFGSQND TRGVKLSSIP LPPKFEKSLP TTHAEEEMPE  720
LLQKQGSPRN IIKSGSPNGK RVSPPQCKSR PSPSRRSTRR LILQAIPSFP SINQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-1648159914120Protein lin-54 homolog
5fd3_B4e-1648159914120Protein lin-54 homolog
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-104TESMIN/TSO1-like CXC 2